Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2b17
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 51 2e-07
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 48 1e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 48 2e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 44 3e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 43 6e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 41 2e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 38 0.002
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 37 0.003
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 37 0.003
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 36 0.005
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 36 0.005
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 36 0.007
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 28 1.3
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 28 1.3
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 2.3
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 2.3
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 26 7.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 7.1
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 25 9.4
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 25 9.4
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 51.2 bits (117), Expect = 2e-07
Identities = 30/94 (31%), Positives = 50/94 (53%)
Frame = +2
Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
GVGK+ L A + S T+G +++ + EG T +++WD G R
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTFEL-EG----KTVKLQIWDTAGQERFRT 72
Query: 332 TRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEI 433
+Y+ HGII+V+D+T++ S N+++WL EI
Sbjct: 73 ITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/94 (28%), Positives = 43/94 (45%)
Frame = +2
Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
G GK+ L N+ TVG ++ G Q Q +++WD G R+
Sbjct: 19 GTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQ-QKRIKLQIWDTAGQEKFRS 77
Query: 332 TRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEI 433
+Y+ G +LV+D+TN+ S L WL++I
Sbjct: 78 VARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI 111
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = +2
Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYK-EGTQAQNTFFVELWDVGGSNGHR 328
GVGK+ L L+ ++ +P + ++ K+ + +G + + +++WD G R
Sbjct: 19 GVGKSCL--LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK----LQIWDTAGQERFR 72
Query: 329 NTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 454
+Y+ GI+L++D+T++KS N++ W + + S N
Sbjct: 73 TITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASEN 114
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 43.6 bits (98), Expect = 3e-05
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +2
Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
GVGKTS+ + + K T+G K E ++LWD G ++
Sbjct: 18 GVGKTSIMNQYVNRKFSKDYKATIGADFLTK-----EVLVDDKVVTLQLWDTAGQERFQS 72
Query: 332 TRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDS-SNP 457
FY+ +LV+D+ N KS L W E L Q S SNP
Sbjct: 73 LGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNP 115
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/101 (25%), Positives = 44/101 (43%)
Frame = +2
Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
GVGK++L N+ + T+G VE ++WD G +R
Sbjct: 20 GVGKSNLLMRFTRNEFNIESKSTIG--VEFATRNI---VLDNKKIKAQIWDTAGQERYRA 74
Query: 332 TRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 454
+Y+ G ++V+D+T + S N+ +WL E+ SN
Sbjct: 75 ITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSN 115
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/93 (29%), Positives = 45/93 (48%)
Frame = +2
Query: 155 VGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRNT 334
VGKTSL +++ + T+G K Y E T ++LWD G R+
Sbjct: 22 VGKTSLITRFMYDQFDNTYQATIGIDFLSKT-MYLE----DRTVRLQLWDTAGQERFRSL 76
Query: 335 RDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEI 433
+ + + I+V+D+TN S VN +KW+ ++
Sbjct: 77 IPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/101 (24%), Positives = 43/101 (42%)
Frame = +2
Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
GVGKT L + + K T+G K + ++LWD G ++
Sbjct: 18 GVGKTCLMNQFVNQKFSREYKATIGADFLTK-----DVVVDDKLVTLQLWDTAGQERFQS 72
Query: 332 TRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 454
FY+ ++V+++ N KS +++ W E L Q S +
Sbjct: 73 LGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQD 113
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 296 LWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQ-KWLAEILNQDSSNPTL 463
LWD G + R + Y +H I++ + + S N+Q KW++E+L+ SS P L
Sbjct: 58 LWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPIL 114
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 290 VELWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQ 442
+E+WD G +++ ++Y+ + I+V+D+T S + W+ E+ Q
Sbjct: 66 LEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQ 116
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 260 EGTQAQNTFFVELWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILN 439
E + +N F +WDVGG + R ++Q T GII V D +R+ + L +LN
Sbjct: 54 ETVEYRNISFT-VWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLN 112
Query: 440 QDSSNPTL 463
+D L
Sbjct: 113 EDELRDAL 120
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 278 NTFFVELWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVN-LQKWLAEI 433
N+ + LWD G + R + Y TH I++ + +R S N + KWL E+
Sbjct: 59 NSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEV 111
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 296 LWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQ-KWLAEILNQDSSNPTL 463
LWD G + R + Y +H +++ + +S N+Q KW++E+L+ S+ P L
Sbjct: 58 LWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPIL 114
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -1
Query: 582 YTTCESSILIFPLFFLRSVVF 520
YT C SSILIF FF SV+F
Sbjct: 153 YTMCRSSILIFVFFF--SVIF 171
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +2
Query: 158 GKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRNTR 337
GKT++ + + N+ +++ TVG +VE +K N F +WDVGG + R
Sbjct: 33 GKTTILYKLKLNQSVVTIP-TVGFNVETVTYK--------NIKF-NVWDVGGQDKIRPLW 82
Query: 338 DVFYQPTHGIILVHD 382
++ T G+I V D
Sbjct: 83 RHYFTGTKGLIFVVD 97
>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 255 YLCNLTSTEQPTVHPGDKMGLLCAIKCVKDVLP 157
YLC + E P +H GD +L +K V ++ P
Sbjct: 118 YLCCFDTLEVPIIHNGDSKTILDELKKVIELYP 150
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 296 LWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEIL 436
+WD G RD +Y I++ D+T+R + N+ W +++
Sbjct: 62 VWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV 108
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 296 LWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQD 445
+WD+GG RN +++ T II V D + + L E+L ++
Sbjct: 64 IWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEE 113
>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 374 VHDLTNRKSQV--NLQKWLAEILNQDSSNPTLQHVDV 478
VH L +K Q+ +LQ LA++ N+D+ +H+D+
Sbjct: 10 VHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDL 46
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 454 SNFTACRRRSGTVLRFHTVIGTKYDAAEEKQRKNQY 561
++F C R S + T++GT Y A E ++N+Y
Sbjct: 451 TDFGFCARLSNRTNKRVTMVGTPYWMAPEVVKQNEY 486
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 146 IVGVGKTSLTHLIAH 190
+ G GKT+L H+IAH
Sbjct: 424 LAGAGKTTLAHVIAH 438
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +2
Query: 296 LWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKW 421
+WD+GG N + I+ + DL+ + + ++++W
Sbjct: 63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 198 PFYRRDGRSVALWKLNYTNTKKEHK 272
P Y+R G L + +Y TK+EHK
Sbjct: 326 PQYQRHGYGKLLIQFSYELTKREHK 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,254
Number of Sequences: 5004
Number of extensions: 74261
Number of successful extensions: 235
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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