Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b17
         (792 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            39   2e-04
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.50 
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       23   8.2  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 293 ELWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 454
           E+WD  G   + +   ++Y+     I+V+D+ N  S    + W+ E+  Q S N
Sbjct: 76  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPN 129


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 328  KHKRCVLPTNAWNHIGARFDEQKKSSESSEVAR 426
            K++RC L TN  NHI    D   K    +E A+
Sbjct: 1063 KNERCTLFTNCCNHISDAIDAIYKQLSRNEAAQ 1095


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 240 TSTEQPTVHPGDKMGLLCAIKCVKDVLPTPTI 145
           TSTE+P + P   M +      + + LPT T+
Sbjct: 512 TSTEEPALEPETIMAVEPESTTLMEELPTTTV 543


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 858,103
Number of Sequences: 2352
Number of extensions: 17615
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83160600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)