Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b17
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    26   0.35 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 334 KRCVLPTNAWNHIGARFDEQKKSSESSEVAR*NIESGQFE-SNFTACR 474
           +RCVL   +W + G +  E +K SE  +V+     +G+F+  NF+A R
Sbjct: 143 QRCVLKWASWTYDGYQL-ELEKQSEQGDVSNYQ-ANGEFDLVNFSARR 188


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 129 NNKAFKL*VWAKHL*H 176
           N + F+L  WAKH+ H
Sbjct: 239 NKQLFQLVAWAKHIPH 254


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 129 NNKAFKL*VWAKHL*H 176
           N + F+L  WAKH+ H
Sbjct: 239 NKQLFQLVAWAKHIPH 254


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 567 SSILIFPLFFLRSVVF 520
           +S ++FPLFFL   VF
Sbjct: 426 ASRIVFPLFFLAINVF 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,905
Number of Sequences: 438
Number of extensions: 5169
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)