Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b11
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.2  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   7.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 446 TTVHTATEEVRSERWREMQESRNND 520
           TTV +  E V+ E  +E  +S NN+
Sbjct: 441 TTVFSNVEVVQEEAKKEESDSNNNN 465


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 619 PRNISRSSRKVAAPLTGSTATTL 687
           P N+S  S  +  PL+ ST   L
Sbjct: 30  PENLSNKSNSITVPLSISTGQRL 52


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 216 IEYGANGSKSGKTNSRMSTLLFWQGKGKGN 305
           I+YG   S  G T   +  LL +Q +GK N
Sbjct: 369 IDYGTLYSLFGSTAMNVIILLQFQKQGKYN 398


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 282 WQGKGKGNGAPNGRNW 329
           WQ  G+  G    RNW
Sbjct: 116 WQDSGESPGFTTERNW 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,173
Number of Sequences: 336
Number of extensions: 3142
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)