Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b11
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   1.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   1.9  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   2.6  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   3.4  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   7.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.8  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 616 PLSSAQYDIRWRGNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFF 467
           PL   ++DI+W   WY +L      + + + +      L+FA  FA DFF
Sbjct: 142 PLHQPKFDIKWSKYWYQLLLGNKKQLDSINAEYGSQVALYFA--FA-DFF 188


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 476 RSERWREMQESRNNDICGRC 535
           R +RWRE  E RN D   RC
Sbjct: 171 RKKRWREQNEERNKDNDLRC 190


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 323 QLDPRSGLARQGPRR-LSR*VPRLHPSRPAER 415
           QLDPR+ L  Q PRR LSR   RL    P  R
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRLSLKEPVYR 236


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 580 GNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFFSCCVNCSFLIASLTTS 419
           G    IL     C+  P+T  +I +F+H    F+S    C +  S  ++SL  S
Sbjct: 245 GPMQCILVISCQCLIVPATFTIIDSFIHTYDGFSS-MTQCLLIISLPLSSLWAS 297


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 586 WRGNWYIILFERGSCMATPSTDIV--ISTFLHFAPSFASDFFSC 461
           WRG+WY+      + +  PS  I+   +T LH      +D + C
Sbjct: 108 WRGDWYVGKGVATASLQHPSGRIISLFNTHLHAPYGKGADTYLC 151


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 523 LWTVLPYRNH-VRTI*CTSSLSTGYRTARTIKAPRNISRSSRKVAAPLTGSTATT 684
           L+T  P  +  + T  CT+S S  Y +     +   IS S+   + P+T +  TT
Sbjct: 539 LYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTT 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,192
Number of Sequences: 5004
Number of extensions: 55138
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)