Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2b11
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939... 32 0.37
07_03_0549 - 19352545-19353420 31 0.65
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 30 2.0
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 29 4.6
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 29 4.6
10_07_0125 - 13096520-13097200,13098209-13098898 28 6.1
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 28 6.1
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 6.1
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 28 6.1
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 8.0
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247... 28 8.0
>12_02_1187 -
26793455-26793496,26793599-26793717,26793813-26793939,
26794382-26794520,26794565-26794833,26794923-26795056,
26795630-26795750
Length = 316
Score = 32.3 bits (70), Expect = 0.37
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = -3
Query: 509 DFLAFRAIFRFGXXXXXXXXXXLDCIFDHLDAFRLVYLGAAEELNEIG---DVALDERVR 339
+ LA A F G L+ + L +V AAE L IG ++L E
Sbjct: 47 NLLAHEAAFALGQMQDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESL 106
Query: 338 SVDPVAAVRCPVPFALTLPEEQGRHSGVSFA 246
+VDP V+ A+ EEQ SGV A
Sbjct: 107 AVDPAVEVQETCELAIRRIEEQKNTSGVESA 137
>07_03_0549 - 19352545-19353420
Length = 291
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 320 PQL--DPRSGLARQGPRRLSR*VPRLHPSRPAERHRGGQ 430
PQ+ PR A P R PRLH S PA R RG +
Sbjct: 5 PQILPSPRLAAAAASPNSAFRPAPRLHSSAPARRGRGAR 43
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +2
Query: 311 TERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERH-----RGGQRCNQETTVHTATEEV 475
T + +DP+ G A + R + V R S+P H G CN + + E V
Sbjct: 469 TAQDLVDPQQGTAARRIRLVCS-VERASVSQPVSSHLQSEYEAGSCCNTRNSSNNKKESV 527
Query: 476 RSERWREMQESRNNDICGRCCHTGTTFEQYN 568
RSE D G CC+TG++ ++
Sbjct: 528 RSE-----------DEAGSCCNTGSSSNNHS 547
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 252 TNSRMSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPK 413
T S+ L+ G GK G P+GR WI P KG + +G +D+ K
Sbjct: 119 TLSKEDVLVAIDG-GKSEGGPSGRYWILDPIDGTKGFIRGDQYAIGLALLDEGK 171
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 586 WRGNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFFSCCVNCS 446
W G YI+LF + + ST I L + SD+ C NCS
Sbjct: 1480 WFGEEYILLFHKLDASSPHSTKINCFDELPMLMDYQSDWERRCNNCS 1526
>10_07_0125 - 13096520-13097200,13098209-13098898
Length = 456
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Frame = -1
Query: 358 PLTSESGAWIQLRPFGAPFPLPLPCQKSRV-----DILELVLPLFDPFAPYSISLPK 203
PL+ W+ L P F P P V D LE VLP F PFA + P+
Sbjct: 32 PLSPFDAYWVALPPVRRVFLFPSPPPFGDVVRALRDSLEAVLPAFYPFAGALVYSPE 88
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 652 PPFAMNEKYFLAPLSSAQYDIRWRGNWYIILFERGSCM 539
PP E LA S +D RW G W + LF + + M
Sbjct: 354 PPLGSIENIELAMFRSKNFD-RWWGEWKLYLFHQPASM 390
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Frame = -1
Query: 436 ASLTTSMPFGWSTWVQPRNLTR*ATWPLTSESGA---WIQLRP-----FGAPFPLPLPCQ 281
++L+T P P+++T PL S S + W+ P P P P PC
Sbjct: 15 STLSTDSPNSAPPGGVPQSITALLNNPLPSASSSSYYWLTWPPPTPLPDAPPPPPPHPCD 74
Query: 280 KSRVDILELVLPLFDPFAPYS 218
SR D + + DPF ++
Sbjct: 75 VSRADFAPYLAAVADPFGRFA 95
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 204 LGSEIEYGANGSKSGKTNSRMSTLLFWQGKGKGNG 308
+G+ YGAN +S N M T +FW G + +G
Sbjct: 190 IGNNAFYGANYIQSVTPNLSMGTEIFWLGHQRKSG 224
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.9 bits (59), Expect = 8.0
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 401 RPAERHRGGQRCNQETTVHTATEEVRSERWREMQESRNNDICGRCCHTGTTFEQY-NVPV 577
R E H GG + + T T E RSE EM R + GT +Y P+
Sbjct: 231 REEEMHCGGWEDDDDHYASTTTSETRSEE-GEMGNRSECGFAARSEYGGTAPSEYAAAPL 289
Query: 578 PSPPDIVLRGR*RRQE 625
P P LR R R E
Sbjct: 290 PLP----LRRRDERSE 301
>04_04_1334 -
32723950-32724121,32724527-32724558,32724665-32724708,
32724962-32725123,32725984-32726422
Length = 282
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -2
Query: 423 PRCLSAGLLGCSXXXXXXXXXXXXRASPERGSSCGRSVPRSLCPYPARRAGSTFWS 256
P +SAGLL CS A+ S C ++P P GS +W+
Sbjct: 25 PDRVSAGLLRCSKRGNGVVGLRLSCAAASPASGCSEALPPYPAPGSYTLPGSPWWA 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,741,333
Number of Sequences: 37544
Number of extensions: 415652
Number of successful extensions: 1443
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -