Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2b11
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 121 6e-28
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 121 6e-28
Z49968-11|CAN86616.1| 492|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z49968-10|CAB54270.3| 490|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z49968-9|CAB54271.3| 492|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z49968-6|CAB54272.2| 474|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 36 0.021
AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein... 31 0.78
AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe... 31 0.78
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 31 0.78
AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe6... 31 0.78
Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 30 1.8
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical ... 28 5.5
Z67736-2|CAA91535.1| 226|Caenorhabditis elegans Hypothetical pr... 28 7.2
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 121 bits (291), Expect = 6e-28
Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Frame = +3
Query: 318 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSE-AKDGA 494
GR WIH PD L+ GHV Y+ +FLGC + + G +V ++AI ++F + LK+SE ++ A
Sbjct: 44 GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103
Query: 495 KCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADDKGAKKYFSFIAK 647
K +KVEI IS+D V I + ++ MY FPL RIS+CADDK K+ FSFIA+
Sbjct: 104 KLQKVEIRISIDNVIIADIKTKAPMYTFPLGRISFCADDKDDKRMFSFIAR 154
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 121 bits (291), Expect = 6e-28
Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Frame = +3
Query: 318 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSE-AKDGA 494
GR WIH PD L+ GHV Y+ +FLGC + + G +V ++AI ++F + LK+SE ++ A
Sbjct: 44 GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103
Query: 495 KCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADDKGAKKYFSFIAK 647
K +KVEI IS+D V I + ++ MY FPL RIS+CADDK K+ FSFIA+
Sbjct: 104 KLQKVEIRISIDNVIIADIKTKAPMYTFPLGRISFCADDKDDKRMFSFIAR 154
>Z49968-11|CAN86616.1| 492|Caenorhabditis elegans Hypothetical
protein M110.5d protein.
Length = 492
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/93 (23%), Positives = 50/93 (53%)
Frame = +3
Query: 363 VAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAI 542
++Y K +G VD+ +G + +A++ + + K+ GA ++ + I++DG+ +
Sbjct: 52 ISYKGKLIGEQDVDKARGDAMCAEAMRT---AKSIIKAA---GAHKTRITLQINIDGIKV 105
Query: 543 QEPRSNNIMYQFPLHRISYCADDKGAKKYFSFI 641
+ +S +++ FP+ RIS+ A D + F +
Sbjct: 106 LDEKSGAVLHNFPVSRISFIARDSSDARAFGLV 138
>Z49968-10|CAB54270.3| 490|Caenorhabditis elegans Hypothetical
protein M110.5a protein.
Length = 490
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/93 (23%), Positives = 50/93 (53%)
Frame = +3
Query: 363 VAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAI 542
++Y K +G VD+ +G + +A++ + + K+ GA ++ + I++DG+ +
Sbjct: 52 ISYKGKLIGEQDVDKARGDAMCAEAMRT---AKSIIKAA---GAHKTRITLQINIDGIKV 105
Query: 543 QEPRSNNIMYQFPLHRISYCADDKGAKKYFSFI 641
+ +S +++ FP+ RIS+ A D + F +
Sbjct: 106 LDEKSGAVLHNFPVSRISFIARDSSDARAFGLV 138
>Z49968-9|CAB54271.3| 492|Caenorhabditis elegans Hypothetical
protein M110.5b protein.
Length = 492
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/93 (23%), Positives = 50/93 (53%)
Frame = +3
Query: 363 VAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAI 542
++Y K +G VD+ +G + +A++ + + K+ GA ++ + I++DG+ +
Sbjct: 52 ISYKGKLIGEQDVDKARGDAMCAEAMRT---AKSIIKAA---GAHKTRITLQINIDGIKV 105
Query: 543 QEPRSNNIMYQFPLHRISYCADDKGAKKYFSFI 641
+ +S +++ FP+ RIS+ A D + F +
Sbjct: 106 LDEKSGAVLHNFPVSRISFIARDSSDARAFGLV 138
>Z49968-6|CAB54272.2| 474|Caenorhabditis elegans Hypothetical
protein M110.5c protein.
Length = 474
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/93 (23%), Positives = 50/93 (53%)
Frame = +3
Query: 363 VAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAI 542
++Y K +G VD+ +G + +A++ + + K+ GA ++ + I++DG+ +
Sbjct: 36 ISYKGKLIGEQDVDKARGDAMCAEAMRT---AKSIIKAA---GAHKTRITLQINIDGIKV 89
Query: 543 QEPRSNNIMYQFPLHRISYCADDKGAKKYFSFI 641
+ +S +++ FP+ RIS+ A D + F +
Sbjct: 90 LDEKSGAVLHNFPVSRISFIARDSSDARAFGLV 122
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 36.3 bits (80), Expect = 0.021
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Frame = +3
Query: 363 VAYLVKFLGCTQVDQP-KGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVA 539
+ + K++G ++ +P IE+V A++++++ + + G K + V+IT+SVDGV
Sbjct: 34 IHFEAKYVGSMEIPRPGTRIEIVA-AMRRVRYEFKAR------GIKKRPVDITVSVDGVK 86
Query: 540 IQEPR-----------SNNIMYQF-PLHRISYCADDKGAKKYFSFIAKGGST 659
+ R + ++ F P++RI Y + D + FS+IA+ G++
Sbjct: 87 VVLQRKKQKEKGLSWDESKLLVMFHPIYRIFYVSHDSQDLQIFSYIARDGAS 138
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 36.3 bits (80), Expect = 0.021
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Frame = +3
Query: 363 VAYLVKFLGCTQVDQP-KGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVA 539
+ + K++G ++ +P IE+V A++++++ + + G K + V+IT+SVDGV
Sbjct: 34 IHFEAKYVGSMEIPRPGTRIEIVA-AMRRVRYEFKAR------GIKKRPVDITVSVDGVK 86
Query: 540 IQEPR-----------SNNIMYQF-PLHRISYCADDKGAKKYFSFIAKGGST 659
+ R + ++ F P++RI Y + D + FS+IA+ G++
Sbjct: 87 VVLQRKKQKEKGLSWDESKLLVMFHPIYRIFYVSHDSQDLQIFSYIARDGAS 138
>AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein
protein.
Length = 577
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 381 FLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAIQEPRSN 560
FLG TQV + GIE++ +A+ +L + ++ D + + V+G I E R
Sbjct: 411 FLGVTQVPKATGIEILNEAVDRLVSQVRSERWILADVSIAPSTIAIVEVNGQQIAECRVR 470
Query: 561 NIMYQFPLHRISYCA 605
+ + + +CA
Sbjct: 471 YLSFLGIGRDVKHCA 485
>AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform c protein.
Length = 554
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 381 FLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAIQEPRSN 560
FLG TQV + GIE++ +A+ +L + ++ D + + V+G I E R
Sbjct: 388 FLGVTQVPKATGIEILNEAVDRLVSQVRSERWILADVSIAPSTIAIVEVNGQQIAECRVR 447
Query: 561 NIMYQFPLHRISYCA 605
+ + + +CA
Sbjct: 448 YLSFLGIGRDVKHCA 462
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 381 FLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAIQEPRSN 560
FLG TQV + GIE++ +A+ +L + ++ D + + V+G I E R
Sbjct: 550 FLGVTQVPKATGIEILNEAVDRLVSQVRSERWILADVSIAPSTIAIVEVNGQQIAECRVR 609
Query: 561 NIMYQFPLHRISYCA 605
+ + + +CA
Sbjct: 610 YLSFLGIGRDVKHCA 624
>AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform b protein.
Length = 640
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 381 FLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAIQEPRSN 560
FLG TQV + GIE++ +A+ +L + ++ D + + V+G I E R
Sbjct: 499 FLGVTQVPKATGIEILNEAVDRLVSQVRSERWILADVSIAPSTIAIVEVNGQQIAECRVR 558
Query: 561 NIMYQFPLHRISYCA 605
+ + + +CA
Sbjct: 559 YLSFLGIGRDVKHCA 573
>Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical
protein W09D6.1b protein.
Length = 714
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 535 TPSTDIVISTFLHFAPSFASDFFSCCVNCSFLI 437
T S I+ ST LHF PS F + V C+ +I
Sbjct: 154 TSSDSILFSTSLHFDPSIVELFMAFHVGCTLII 186
>Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical
protein W09D6.1a protein.
Length = 707
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 535 TPSTDIVISTFLHFAPSFASDFFSCCVNCSFLI 437
T S I+ ST LHF PS F + V C+ +I
Sbjct: 154 TSSDSILFSTSLHFDPSIVELFMAFHVGCTLII 186
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Frame = +3
Query: 369 YLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAIQE 548
+ + L +V KG +V+ A+ K+ K SE + + V + IS G+ + +
Sbjct: 855 FYLTMLASIEVAHHKGNDVLTQAMNKV--LSMYKNSE--EIIVPQTVLMEISFRGIHVID 910
Query: 549 PRSNNI----MYQF--PLHRISYCADDKGAKKYFSFIAK 647
R N M+ F L IS+C KYF FI K
Sbjct: 911 KRRKNFFQCPMFDFFYSLQNISFCGAHPKQLKYFGFITK 949
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 416 HRGGQRCNQETTVHTATEEVRSERWREMQESRNNDICGRCCHTGTTFEQYNVPVPSPPDI 595
HRGG+R + + EEVRS R M ++ + +G + E+ PS PDI
Sbjct: 217 HRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKER----SPSQPDI 272
>AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical
protein F48A11.4 protein.
Length = 382
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -3
Query: 617 AFIVRAVRYPVERELVHYIVRTWFLYGNTVHRYRYFDFLAF 495
+F V +++ R L H+ + W ++G+ + + YF L F
Sbjct: 341 SFFVSSLKICKSRTLPHFTTQNWLIFGSYLIYFLYFGNLFF 381
>Z67736-2|CAA91535.1| 226|Caenorhabditis elegans Hypothetical
protein F57G12.2 protein.
Length = 226
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 467 EEVRSERWREMQESRNNDICGRCCHTGTTFEQYNVPVPSPPDI-VLRGR*RRQEI 628
E +E+W+E ++ + + R F++ N P P+PP ++R R R+ E+
Sbjct: 12 EYEEAEKWQEQEDDEDALMIAR--KIKQEFDEANTPSPAPPPTHIVRERLRQVEV 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,394
Number of Sequences: 27780
Number of extensions: 325014
Number of successful extensions: 1061
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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