Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b11
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = -1

Query: 637 NEKYFLAPLSSAQYDIRWRGNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFFSCC 458
           ++KY    +     + R R  +Y    + GSC+ TP +    S   H   +F +    C 
Sbjct: 24  SDKYDYVNIDEILANDRLRNQYYDCFIDAGSCL-TPDSVFFKS---HITEAFQTQCKKCT 79

Query: 457 ----VNCSFLIASLTTSMPFGWSTWVQ 389
                N   L    TT+ P  W+ +V+
Sbjct: 80  EIQKQNLDKLAEWFTTNEPEKWNHFVE 106


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = -1

Query: 637 NEKYFLAPLSSAQYDIRWRGNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFFSCC 458
           ++KY    +     + R R  +Y    + GSC+ TP +    S   H   +F +    C 
Sbjct: 24  SDKYDYVNIDEILANDRLRNQYYDCFIDAGSCL-TPDSVFFKS---HITEAFQTQCKKCT 79

Query: 457 ----VNCSFLIASLTTSMPFGWSTWVQ 389
                N   L    TT+ P  W+ +V+
Sbjct: 80  EIQKQNLDKLAEWFTTNEPEKWNHFVE 106


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = +2

Query: 293  GQRERGTERPQLDPRS-GLARQGPRR--LSR*VPRL-HPSRPAERHRGGQRCNQE-TTVH 457
            G+ + G++R    P    ++R G R    +R   +L   SR  E H GGQ+ +++  T+ 
Sbjct: 1385 GRNDDGSDRLTSPPTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRKTLT 1444

Query: 458  TATEEVRSERWREMQESR 511
            +A ++ + ++ ++ Q+ +
Sbjct: 1445 SAPQQPQQQQQQQQQQQQ 1462


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 317 RPQLDPRSGLARQ 355
           RP L+PR GLA Q
Sbjct: 169 RPPLNPRFGLAHQ 181


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 317 RPQLDPRSGLARQ 355
           RP L+PR GLA Q
Sbjct: 179 RPPLNPRFGLAHQ 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,613
Number of Sequences: 438
Number of extensions: 4530
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)