Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b10
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    33   0.065
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    30   0.46 
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.80 
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.80 
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    27   2.4  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   3.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   4.3  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   5.6  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   7.4  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   9.8  

>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 32.7 bits (71), Expect = 0.065
 Identities = 15/70 (21%), Positives = 38/70 (54%)
 Frame = +2

Query: 2   LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
           L ++E++ +      Y S+ +MF++SDL  ++ +L  +  +L   I+ L  ++     T 
Sbjct: 38  LAKKELEDVGEDKAVYTSLGKMFMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTA 97

Query: 182 NESESNIRDL 211
           + +E +++ +
Sbjct: 98  SNAEQHLQKI 107


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +2

Query: 35  GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 214
           GTK YE +AR + Q  LE  +Q+ +     L   + D +    C    + +  S+ +D  
Sbjct: 146 GTKVYEELARKYPQHSLESWRQHYKYMKKRL-PPVSDSDESNYC-QRIIVKPYSSQKDYT 203

Query: 215 QQKRMKNENQPAAES 259
           Q    +  + P ++S
Sbjct: 204 QSTHEQTLSSPISKS 218


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 528 FMIFNPFI---ILFNNTVHYFNNTPTCLLSNLM*CKSLLLTIVDSFFYVQIIILYY 370
           F IF PFI   +L++N  +YF+     L S +   K ++ TIV  F YV  +I+ Y
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVV---KYVIETIVLIFTYVMTVIIVY 130


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 528 FMIFNPFI---ILFNNTVHYFNNTPTCLLSNLM*CKSLLLTIVDSFFYVQIIILYY 370
           F IF PFI   +L++N  +YF+     L S +   K ++ TIV  F YV  +I+ Y
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVV---KYVIETIVLIFTYVMTVIIVY 130


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +2

Query: 2   LTQREIDVLPPGTKTY-----ESMARMFVQSDLEHIKQN 103
           LT   + V PP T+TY     E+   MF+  DLE++ QN
Sbjct: 205 LTTSGMSVHPPVTETYTYPVTEAFQGMFLGLDLEYVPQN 243


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 204 LMLDSLSFKVWFKHTFRLFKSSMRLINVLVFC 109
           + L++ S++ W KH F+L   S   +N L  C
Sbjct: 329 IRLENASWRTWMKHKFKLKTISPETLNWLKEC 360


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +2

Query: 14  EIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESE 193
           E  +LP    +YE++  +F + D +H+ ++       LI +  D +     L H +N+  
Sbjct: 364 ESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSD-SELHTFLFHCVNKIV 422

Query: 194 SN 199
           +N
Sbjct: 423 AN 424


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 519 FNPFIILFNNTVH 481
           F PF+I+FNN VH
Sbjct: 499 FTPFLIIFNNLVH 511


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +2

Query: 41  KTYESMARMFVQSDL--EHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 214
           KTYE + + +    L  + +K  L    NTL++ + +   +   L+  L  +  + +DL 
Sbjct: 294 KTYEEVEKAYKDLTLSPQDLKLGLESSVNTLLAGVQEQLKQYPDLDSILKAAYPDPKDLK 353

Query: 215 QQKRMKNENQPAAE 256
           +  + K +++  A+
Sbjct: 354 KAMKQKKQDKKNAK 367


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 487 CIIKQYNKRIEYHKIRGVKNLFPQIFYLLYYDDI 588
           C+ K  NK++ YH++   ++ +    +L+Y  D+
Sbjct: 457 CLEKAGNKQVVYHELDANESFYGHDTFLIYRKDL 490


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 110 QKTNTLISRIDDLNNRKVCLNHTLNE 187
           QKT + + R+ D N+R++CL  T  E
Sbjct: 92  QKTGSELFRLHDRNDREMCLAPTHEE 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,657
Number of Sequences: 5004
Number of extensions: 53633
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)