Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b10
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0137 + 15624078-15624101,15624259-15624312,15624900-156249...    46   4e-05
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    38   0.010
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470           34   0.12 
04_03_0841 - 20230920-20230994,20231084-20231164,20231410-202315...    31   1.5  
04_04_0667 + 27097741-27098085,27098203-27098547                       30   2.6  

>02_03_0137 +
           15624078-15624101,15624259-15624312,15624900-15624954,
           15625192-15625296,15625682-15625722,15626057-15626162,
           15627010-15627016,15627134-15627218,15627315-15627428
          Length = 196

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 25/73 (34%), Positives = 37/73 (50%)
 Frame = +2

Query: 2   LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
           LT  E+  LP  T TY+++ ++F+      +     QK N   S I  +   K  L   L
Sbjct: 110 LTLEELRQLPDNTNTYKTVGKVFILEPKSLLLNEQEQKLNDSESAIASMQTSKEYLEKQL 169

Query: 182 NESESNIRDLIQQ 220
            E E+NIR+L+QQ
Sbjct: 170 AEVENNIRELLQQ 182


>10_08_0838 -
           20927020-20927207,20927288-20927491,20927654-20928297,
           20928549-20928788,20928884-20928978,20929087-20929434,
           20929824-20930042,20930422-20930487,20931191-20931362,
           20931456-20931703,20931933-20932073,20932238-20932330,
           20932421-20932471,20933571-20933693,20933793-20934035,
           20934131-20934211,20935245-20935340,20935535-20936320,
           20936443-20937012,20937322-20937427,20938102-20938206,
           20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +2

Query: 59  ARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESES 196
           A M +Q+DL+ +K  L +K N    R+ DLN +K  L H ++ES+S
Sbjct: 185 ATMVLQNDLDWLKYQLNEKAN----RLQDLNQQKHLLEHRISESDS 226


>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
          Length = 675

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 71  VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNE--SESNIRDLIQQ 220
           +++DLEH K+N RQ     I  +D+L   K+  N+ L E  +E   R+L ++
Sbjct: 261 MKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEYDNERKTRELTEE 312


>04_03_0841 -
           20230920-20230994,20231084-20231164,20231410-20231520,
           20232050-20232268
          Length = 161

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +2

Query: 50  ESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRM 229
           ES    F++ +LE +    R++   +  RID +N +   L  T  + E   +++++    
Sbjct: 64  ESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEKEYKEILEAYNE 123

Query: 230 KNENQ 244
           KN+ +
Sbjct: 124 KNKEK 128


>04_04_0667 + 27097741-27098085,27098203-27098547
          Length = 229

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 83  LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 208
           LEH    LR K + L SR++ L   K+ L   L+E    +R+
Sbjct: 84  LEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLRE 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,064,168
Number of Sequences: 37544
Number of extensions: 254198
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)