Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2b10
(823 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y17392-1|CAA76759.1| 122|Homo sapiens prefoldin subunit 1 protein. 50 1e-05
AK223394-1|BAD97114.1| 122|Homo sapiens prefoldin 1 variant pro... 50 1e-05
BC011869-1|AAH11869.1| 122|Homo sapiens prefoldin subunit 1 pro... 49 2e-05
BC006202-1|AAH06202.1| 122|Homo sapiens prefoldin subunit 1 pro... 49 2e-05
BC003620-1|AAH03620.1| 122|Homo sapiens prefoldin subunit 1 pro... 49 2e-05
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 31 5.0
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 31 5.0
AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein. 31 5.0
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 31 5.0
Z38133-1|CAA86293.1| 1937|Homo sapiens Myosin protein. 30 8.8
>Y17392-1|CAA76759.1| 122|Homo sapiens prefoldin subunit 1 protein.
Length = 122
Score = 49.6 bits (113), Expect = 1e-05
Identities = 26/75 (34%), Positives = 37/75 (49%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
LT EI L T YE + RMF+ E I L +K +I +L +K L L
Sbjct: 46 LTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERRL 105
Query: 182 NESESNIRDLIQQKR 226
E+E NIR+++ +R
Sbjct: 106 KEAEDNIREMLMARR 120
>AK223394-1|BAD97114.1| 122|Homo sapiens prefoldin 1 variant
protein.
Length = 122
Score = 49.6 bits (113), Expect = 1e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
LT EI L T YE + RMF+ E I L +K +I +L +K L ++
Sbjct: 46 LTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKVAEEKIKELEQKKSYLERSV 105
Query: 182 NESESNIRDLIQQKR 226
E+E NIR+++ +R
Sbjct: 106 KEAEDNIREMLMARR 120
>BC011869-1|AAH11869.1| 122|Homo sapiens prefoldin subunit 1
protein.
Length = 122
Score = 49.2 bits (112), Expect = 2e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
LT EI L T YE + RMF+ E I L +K +I +L +K L ++
Sbjct: 46 LTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSV 105
Query: 182 NESESNIRDLIQQKR 226
E+E NIR+++ +R
Sbjct: 106 KEAEDNIREMLMARR 120
>BC006202-1|AAH06202.1| 122|Homo sapiens prefoldin subunit 1
protein.
Length = 122
Score = 49.2 bits (112), Expect = 2e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
LT EI L T YE + RMF+ E I L +K +I +L +K L ++
Sbjct: 46 LTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSV 105
Query: 182 NESESNIRDLIQQKR 226
E+E NIR+++ +R
Sbjct: 106 KEAEDNIREMLMARR 120
>BC003620-1|AAH03620.1| 122|Homo sapiens prefoldin subunit 1
protein.
Length = 122
Score = 49.2 bits (112), Expect = 2e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
LT EI L T YE + RMF+ E I L +K +I +L +K L ++
Sbjct: 46 LTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSV 105
Query: 182 NESESNIRDLIQQKR 226
E+E NIR+++ +R
Sbjct: 106 KEAEDNIREMLMARR 120
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 31.1 bits (67), Expect = 5.0
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
+T++E+D L +K+ +S + +++ L H K Q++ ++ R+ D+N R L L
Sbjct: 352 ITKKELDQLDSKSKS-KSKSPSPLKNKLSHTKDLKNQESESM--RLSDMNKRDPRLKKHL 408
Query: 182 NESESNIRDLIQQKRMKNENQPAAE 256
+ D +++KR E + E
Sbjct: 409 QDKTDGKDDDVKEKRKTAEKKDKDE 433
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 31.1 bits (67), Expect = 5.0
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
+T++E+D L +K+ +S + +++ L H K Q++ ++ R+ D+N R L L
Sbjct: 352 ITKKELDQLDSKSKS-KSKSPSPLKNKLSHTKDLKNQESESM--RLSDMNKRDPRLKKHL 408
Query: 182 NESESNIRDLIQQKRMKNENQPAAE 256
+ D +++KR E + E
Sbjct: 409 QDKTDGKDDDVKEKRKTAEKKDKDE 433
>AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein.
Length = 725
Score = 31.1 bits (67), Expect = 5.0
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
+T++E+D L +K+ +S + +++ L H K Q++ ++ R+ D+N R L L
Sbjct: 352 ITKKELDQLDSKSKS-KSKSPSPLKNKLSHTKDLKNQESESM--RLSDMNKRDPRLKKHL 408
Query: 182 NESESNIRDLIQQKRMKNENQPAAE 256
+ D +++KR E + E
Sbjct: 409 QDKTDGKDDDVKEKRKTAEKKDKDE 433
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 31.1 bits (67), Expect = 5.0
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +2
Query: 2 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 181
+T++E+D L +K+ +S + +++ L H K Q++ ++ R+ D+N R L L
Sbjct: 441 ITKKELDQLDSKSKS-KSKSPSPLKNKLSHTKDLKNQESESM--RLSDMNKRDPRLKKHL 497
Query: 182 NESESNIRDLIQQKRMKNENQPAAE 256
+ D +++KR E + E
Sbjct: 498 QDKTDGKDDDVKEKRKTAEKKDKDE 522
>Z38133-1|CAA86293.1| 1937|Homo sapiens Myosin protein.
Length = 1937
Score = 30.3 bits (65), Expect = 8.8
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +2
Query: 8 QREIDVLPPGTKTYESMARMFVQSD-LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLN 184
Q E V K +SMA + Q D L+ +KQ L ++ + L DDL++ ++
Sbjct: 1187 QHEAMVAALRKKHADSMAELGEQIDNLQRVKQKLEKEKSELKMETDDLSSNAEAISKAKG 1246
Query: 185 ESES---NIRDLIQQKRMKNENQ 244
E ++ D + + + K E Q
Sbjct: 1247 NLEKMCRSLEDQVSELKTKEEEQ 1269
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,224,904
Number of Sequences: 237096
Number of extensions: 1594233
Number of successful extensions: 3605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3605
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -