Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2b10
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical pr... 36 0.026
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 30 2.3
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical ... 28 7.0
AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protei... 28 7.0
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 28 9.3
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 28 9.3
U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical pr... 28 9.3
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 28 9.3
>Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical
protein C08F8.1 protein.
Length = 117
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 5 TQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLN 184
T++ + L K Y S+ RMF+ +D + +I+ + +K L L
Sbjct: 44 TKKNLVDLDENLKYYRSVGRMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLV 103
Query: 185 ESESNIRDLIQQKR 226
E+E+N+R+LIQ +R
Sbjct: 104 EAETNLRELIQSRR 117
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 23 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 196
VL P YE A + VQSD +L + LI + +L ++ + NH+ N
Sbjct: 206 VLDPAI-AYEISATVTVQSD-----PDLEIDYDNLIQSLKELQDQAIVRPANHSSNRLSE 259
Query: 197 NIRDLIQQKRMKNENQPAAES 259
R L+ ++R + N P +S
Sbjct: 260 ETRKLLNKRRFMDRNDPQFKS 280
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 77 SDLEHIKQNLRQKTNTLISRIDDLNNR------KVCLNHTLNESESNIRDLIQQKRMKN 235
+D+E +K+ LRQK L DDL N+ K+ L E +RDL + KN
Sbjct: 12 ADVERLKKILRQKDEMLEEMEDDLKNQGKPCSSKLSLEERAQELSEQLRDLHVEMDGKN 70
>AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical
protein Y75B8A.2a protein.
Length = 233
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 204 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 121
LMLD KVWF+ +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227
>AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protein
protein.
Length = 233
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 204 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 121
LMLD KVWF+ +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 567 IKYLWEQILYPSYFMIFNPFIILFNNTVHYFNNT 466
+ Y +LY Y MI+ P I+L+NN +N T
Sbjct: 93 VNYGGVNVLYVPYEMIWVPDIVLYNNADSNYNIT 126
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 567 IKYLWEQILYPSYFMIFNPFIILFNNTVHYFNNT 466
+ Y +LY Y MI+ P I+L+NN +N T
Sbjct: 93 VNYGGVNVLYVPYEMIWVPDIVLYNNADSNYNIT 126
>U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical
protein F47B3.7 protein.
Length = 374
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 119 NTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQP 247
NT SR ++ + ++HTLN+ S +RD + KN N P
Sbjct: 41 NTAQSRRMHVSIVRPWVHHTLNKGVSKLRDEFSEVANKNPNVP 83
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 567 IKYLWEQILYPSYFMIFNPFIILFNNTVHYFNNT 466
+ Y +LY Y MI+ P I+L+NN +N T
Sbjct: 93 VNYGGVNVLYVPYEMIWVPDIVLYNNADSNYNIT 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,715
Number of Sequences: 27780
Number of extensions: 295748
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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