Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b09
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   3.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   4.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   5.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   7.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.5  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    25   9.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.5  

>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 313 SGRALVFYEYFRELVDKECSSQ 248
           SG  L+FYE  R++  KEC  +
Sbjct: 189 SGFQLLFYEKLRQVAQKECGQK 210


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = +1

Query: 148 LQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMPGTNT 261
           L R+E+  I+Y T+ +  + E+ C+  G+ N++ GT++
Sbjct: 776 LIRIELD-IKYATSFYDELNEKWCSEEGEYNVLVGTSS 812


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 48  IVQQNVSSTRPNYW*THCSFKSTGSTIPCSTHSPTTGGGSCNP 176
           IV  N S+ RP     H   +STGS    S+ S  + GGS NP
Sbjct: 241 IVTHNTSNFRPEGG-GHRHRRSTGSLSVGSSGSGFSSGGSGNP 282


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 471 MLHINDLLFFGNSMGVDGLHYTYQSESAEKQSQTIQY 361
           MLH + ++FF + +G+D + +    +S E   + IQY
Sbjct: 204 MLHRDKIVFFLHLLGIDTIGHNKHPDSVE-YVENIQY 239


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 454 IINVKHNYVS*WFGVITLRNKDN 522
           II+ K NY   WF +I + ++DN
Sbjct: 152 IISYKSNYNEEWFTLIGISSRDN 174


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 106 SNLQAPL-FPVAPIALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVPE 282
           + L +P+  P A  A+Q  + PV   ++   + V +   AA        G N   P  PE
Sbjct: 266 NTLASPVTLPAANSAVQNAQ-PVPMTSSPAMAVVPQNKTAATSTLAAQQGANVLPPNAPE 324

Query: 283 NIR 291
           ++R
Sbjct: 325 SVR 327


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
 Frame = +1

Query: 52  YSKMYHQLGRITGRLIAASNLQAPLFPVAPIALQRVEVPVIQYNTNQFSTVTEEACAAPG 231
           +   Y  L +  G  +       P  P AP  L     P++ + T+ FST      A   
Sbjct: 222 FETYYGVLTKCAGASLGMRLHSGPSHPYAPFILTCTLNPIVGHITSTFSTAEPRTKAFSA 281

Query: 232 KRNL-MPGTNTPYPPVPENIRRKQELFQRDND 324
           + +  +    +      E  R KQE+ Q  ND
Sbjct: 282 QYDFNIYSYESQLKLGIELWRSKQEMSQSTND 313


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 214 ACAAPGKRNLMPGTNTPYPPVPEN 285
           A  AP   N    ++T  PPVPEN
Sbjct: 444 ALKAPAPENKPEKSSTSKPPVPEN 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,662
Number of Sequences: 5004
Number of extensions: 51121
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)