Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b08
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    27   0.20 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    27   0.20 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   3.3  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   3.3  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 429 GTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRF 545
           G DPE ++ N  G F + N G +    L     T G R+
Sbjct: 306 GQDPESLLINGKGQFRDPNTGFMTNTPLEVFTITPGRRY 344


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 429 GTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRF 545
           G DPE ++ N  G F + N G +    L     T G R+
Sbjct: 306 GQDPESLLINGKGQFRDPNTGFMTNTPLEVFTITPGRRY 344


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 635 VFKNTREFHIIEESIADWCFPEH-FIHIIV 549
           VFKN  E  +   S+A W   +H +++I++
Sbjct: 117 VFKNIEEVDVAFRSLAVWVPYKHLYVNILI 146


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 635 VFKNTREFHIIEESIADWCFPEH-FIHIIV 549
           VFKN  E  +   S+A W   +H +++I++
Sbjct: 117 VFKNIEEVDVAFRSLAVWVPYKHLYVNILI 146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,848
Number of Sequences: 336
Number of extensions: 3705
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)