Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b08
         (727 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    28   0.26 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    27   0.45 
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    26   1.0  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    26   1.0  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   7.3  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 222 DQAQIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDYLEGMMNEAPGP 383
           +Q    +F E   + D+N DG +   +L   L +LG+   +  L+ +M +   P
Sbjct: 80  EQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDP 133


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -3

Query: 290 NESIPVLINHIE--SLLELCYLSLIKHSK-----HIGGCTLCALLVNATTGCLAR*H 141
           N ++PV+IN +E  +   + YL ++  ++     H+  CT  AL      GCL R H
Sbjct: 733 NINVPVVINGVERRTTRSIRYLGVVIDNQLSWKSHVEYCTTKALRTAKALGCLMRNH 789


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 429 GTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRF 545
           G DPE ++ N  G F + N G +    L     T G R+
Sbjct: 348 GQDPESLLINGKGQFRDPNTGFMTNTPLEIFTITPGRRY 386


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 429 GTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRF 545
           G DPE ++ N  G F + N G +    L     T G R+
Sbjct: 348 GQDPESLLINGKGQFRDPNTGFMTNTPLEIFTITPGRRY 386


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 325 KDASISCRSSLSMNPSLF 272
           + AS+ CRSSL+    LF
Sbjct: 44  RSASVDCRSSLASGSKLF 61


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,076
Number of Sequences: 2352
Number of extensions: 15719
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)