Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b02
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    36   0.006
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    36   0.008
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   2.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    26   4.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.4  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   6.4  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   8.4  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 26/94 (27%), Positives = 48/94 (51%)
 Frame = +1

Query: 367  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 546
            ++ K +  ++ +G+  S   V+  +E + V T  + + Y  LTD S+E      ENK  L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501

Query: 547  LVINKLLEPINVADSHWKQKTDKVVIFLAKSNPN 648
            L+I+   + +++  S +K K   ++ F  KS  N
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNKSFQN 3535


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
 Frame = +1

Query: 379 YQVKLNV--YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLV 552
           +QVKL    Y WDQ+   V + + +         QV   +++  +++ ++  E K  +L+
Sbjct: 2   HQVKLEEAEYEWDQTIADVDIVIHVPKGTRAKSLQV--DMSNHDLKIQINVPERK--VLL 57

Query: 553 INKLLEPINVADSHWK-QKTDKVVIFLAKSNPNTTWS 660
              L + IN+ +S W  ++ +++VI L KSN    WS
Sbjct: 58  SGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWS 94


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 535 KDYLLVINKLLEPINVADSHWKQ 603
           ++YLL+   +  P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 568 EPINVADSHWKQKTDKVVIFLAKSNPNTTW-SHM-TEIEKKFEDQRNNRLKPAETD 729
           EPI+  +   ++        L+K  P   W SHM ++ +K+ E+    +L+ A+ D
Sbjct: 202 EPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQID 257


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +1

Query: 367  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 546
            +QK Y+       WD+SDK V  ++E  N   L K     K T  S  L    L   D  
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251

Query: 547  LVINKLLEPINVADSHWKQK 606
             +I+ L + +   D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 613 YLFFVSNDCLPHL 575
           ++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 520 DNLENKDYLLVINKLL 567
           DNLEN DY+L +  LL
Sbjct: 569 DNLENDDYVLALRDLL 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,889
Number of Sequences: 5004
Number of extensions: 57277
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)