Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b02
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    35   0.052
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    29   2.6  
U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z99281-2|CAB16506.2|  224|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activati...    28   5.9  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    28   5.9  
AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase activa...    28   5.9  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +1

Query: 346 TTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCK---LTDKSMELH 516
           T+S   P  K+  +K  +   D   K  K  V+ K+  ++ +EQ+Y K     D+ ++  
Sbjct: 5   TSSEDVPENKQKSLKFEII--DARMKIFKDIVKSKSSESVKEEQIYQKSLEFFDEDLKSS 62

Query: 517 VDNLENKDYLLVINKLLEPINVAD 588
            +++ N++      K LEP+NV D
Sbjct: 63  EESVSNEEIKTGSEKELEPLNVFD 86


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 328 EVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSM 507
           ++  +P       V K    +L  YGWDQ  +    FV      TL  +  YC L D   
Sbjct: 21  DLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFGTFVH----RTLCSKVYYCALHDPVW 76

Query: 508 ELH 516
           EL+
Sbjct: 77  ELY 79


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 240 ESTGFTLLGDQKT*DRTNNIKRKGNFDAHGSITNTHNKYIS-SSAKEVSSQIECIWL 407
           E TGFT+        R N +K  GN+DA   I  T N +I+  +AK  S  ++C  L
Sbjct: 79  EETGFTIETTSGARVRANILK--GNYDAAIQILETSNDHITEETAKHGSYIVKCFKL 133


>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 574 INVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIE-KKFEDQRNN 705
           ++V+DS ++   D  VI L   +P TTW   T ++ KK   + +N
Sbjct: 297 LSVSDSVFQSSRDGEVINLLIEDPRTTWDRKTVLKHKKVNKEADN 341


>Z99281-2|CAB16506.2|  224|Caenorhabditis elegans Hypothetical
           protein Y57G11C.4 protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 178 IQEIRSDIEEINDLLKQ 228
           +QEIR  +EE+NDLL Q
Sbjct: 44  VQEIRKSLEEVNDLLDQ 60


>U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activating
           protein familyprotein 1 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +1

Query: 382 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 555
           QV  +   W +   + K +V+L N H + ++ V C  K T    ++   N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479

Query: 556 NKLLE 570
            + ++
Sbjct: 480 CETMQ 484


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 469 LVVYEHSLVQQIP*QIYP--TGPNHIHSI*LDTSFALELMYLLWVLVILPWASKFPFL 302
           + ++E+  +Q I   ++   T P  + S   D SFAL L+  +  ++  PW  +  +L
Sbjct: 226 IYIHEYMFIQSIMVLLFKIVTAPFWVESFNSDLSFALPLIMSITDVITTPWLIQLSYL 283


>AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase
           activating protein GAP-1 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +1

Query: 382 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 555
           QV  +   W +   + K +V+L N H + ++ V C  K T    ++   N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479

Query: 556 NKLLE 570
            + ++
Sbjct: 480 CETMQ 484


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 532 FPDCPHAAPLIYLSIYNIPVPLVVYEHSLVQQI-P*QIYPTGP 407
           FP  P + PL++   +  P P V   HS VQQ  P  I+PT P
Sbjct: 126 FPPAP-SVPLLHDRYFVPPPPPVPPRHSRVQQSPPVPIHPTPP 167


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 532 FPDCPHAAPLIYLSIYNIPVPLVVYEHSLVQQI-P*QIYPTGP 407
           FP  P + PL++   +  P P V   HS VQQ  P  I+PT P
Sbjct: 126 FPPAP-SVPLLHDRYFVPPPPPVPPRHSRVQQSPPVPIHPTPP 167


>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 517 VDNLENKD-YLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFED 693
           V +LENKD YLLV  +  +  N+  S  K+K +++ +     N     S    +EK  E 
Sbjct: 279 VTSLENKDDYLLVTVEFQKRKNILFSELKKKNEEIKMLQESFNVYQKDSIEKVMEKFLEL 338

Query: 694 QRNN 705
           Q  N
Sbjct: 339 QHQN 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,229
Number of Sequences: 27780
Number of extensions: 311505
Number of successful extensions: 1010
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)