Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b01
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    30   0.71 
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    29   1.2  
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    27   3.8  
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987...    27   6.6  
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800           27   6.6  
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    26   8.7  
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859...    26   8.7  

>04_01_0126 -
           1340540-1341376,1341437-1341900,1342105-1342156,
           1342225-1342799,1343596-1343703,1345823-1346155,
           1346783-1349306
          Length = 1630

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 20/64 (31%), Positives = 39/64 (60%)
 Frame = -2

Query: 195 FPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVVCIKV 16
           +  +  +F S++ KH+ +L   V +L + I +  +L++  V  + +++ SKYLR+   KV
Sbjct: 571 YNMESTVFRSYS-KHHRKL---VVVLAVPIASTVILLI-FVGVMFMLWKSKYLRIDATKV 625

Query: 15  GTAL 4
           GTA+
Sbjct: 626 GTAV 629


>05_06_0102 -
           25589011-25589181,25589269-25589496,25589589-25589933,
           25590406-25590777,25590957-25591049,25591150-25591401,
           25592019-25593224
          Length = 888

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 206 QVYLRVLKDLVHFWDNYDGAAFY 274
           Q+    L  L+HFWD +DG   Y
Sbjct: 561 QIACSTLDGLIHFWDPFDGLLMY 583


>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 151 VLRGVAYKNIVLLREGCNTSLLAGVKGPRTFLG*LRWRSILFGG 282
           V+RGV Y+N +L R GC       + GP T++    WR  L  G
Sbjct: 195 VMRGVCYENAMLCRVGCPH---LEIVGPVTYM----WRPFLREG 231


>11_06_0249 +
           21697863-21697923,21698119-21698128,21698160-21698766,
           21699011-21699090,21699182-21699263,21699357-21699428,
           21700128-21700406
          Length = 396

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 234 RSFNTRK*TCITSFPQQDNIFVSHTTK--HNYRLPLRVNLLFI 112
           +SFN    + +T  P  DNI VS  T   H   +P  VN++ +
Sbjct: 34  QSFNEELDSTVTITPASDNIDVSDDTSVPHPSEVPATVNVVLV 76


>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
          Length = 363

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 223 HPQVNLYYILPATRQYFCKPHHEAQLSSPF 134
           HP V   +  PA+    C PHH   L +PF
Sbjct: 162 HPAV--IFTPPASNNIPCAPHHHYMLHAPF 189


>09_02_0224 -
           5984128-5984923,5985667-5986718,5986800-5987776,
           5988427-5989228,5990966-5991016,5992391-5993464,
           5994458-5994706
          Length = 1666

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
 Frame = +2

Query: 185 CCGKDVIQVY------LRVLKDLVH 241
           CCG +V+QVY      L++ KD++H
Sbjct: 451 CCGNEVLQVYEKSQGTLKIPKDILH 475


>05_03_0667 +
           16781857-16782001,16784506-16784544,16785229-16785910,
           16786003-16786087,16786747-16786888,16787391-16787575,
           16788011-16788143,16788317-16788405,16788530-16788604,
           16789060-16789173,16789264-16789305
          Length = 576

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 185 CCGKDVIQVYLRVLKDLVHFWDNYDGAAFYLAVINMC 295
           CCG D + +   +L+D++ + D  DG    ++ I  C
Sbjct: 370 CCGSDYLDLKELILEDII-WVDEIDGLLNSISYIEAC 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,824,095
Number of Sequences: 37544
Number of extensions: 187854
Number of successful extensions: 392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)