Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a23
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 89  LFYCYFT*LYKKIEI*LVPKQSRYGS-QWR 3
           LFY   T LYKKI+   VP  S +G   WR
Sbjct: 282 LFYYQLTDLYKKIKK-AVPPLSLHGQLLWR 310


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 653 DPQWQNQIEKDLQDA 697
           + +W+N+ E D QDA
Sbjct: 343 EEEWENENESDYQDA 357


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = -3

Query: 520 LQILFPVENNSFRLNFSVFNIHFVSAQDNRDTFTYTDQISMPVRYIFVRNSRGYVEHDDS 341
           LQ +   E N +  N  + N+ F   Q      T T Q +M +  +   +S+  V  DD+
Sbjct: 355 LQPVCQNEMNKWWWNMKISNLSF-DKQSLLKENTVTCQEAMHM--LKNADSQLLVISDDN 411

Query: 340 TLSLNIVSVSKTTKLLLSGCV 278
                ++S++K T  ++SG V
Sbjct: 412 IHIKGVISLNKLTSYVISGIV 432


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 470 RKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 580
           +K  A+ +V   +       + A    N  +PF WLA
Sbjct: 193 KKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 229


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 155  TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK 298
            T F  RH     +        +++  L  +T +G +++ +W   G+EK
Sbjct: 984  TPFEHRHFISGIDSNLHVYAPLKIS-LDVNTPKGNMQWKIWPMKGEEK 1030


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 470 RKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 580
           +K  A+ +V   +       + A    N  +PF WLA
Sbjct: 283 KKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 319


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +2

Query: 380 KNVPNWHRDLVRVCEGIPIVLCGNKVDIK 466
           K++ +W  ++  + +G P++   N +D++
Sbjct: 379 KSLEDWENEMNIITKGKPLIRVENIIDLE 407


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 389 PNWHRDLVRVCEGIPIV 439
           PNW  + V+ C+G+  V
Sbjct: 107 PNWSYNDVKYCDGLTSV 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,594
Number of Sequences: 438
Number of extensions: 5482
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)