Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2a13
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 100 2e-22
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 98 5e-22
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 85 5e-18
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 71 7e-14
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 57 1e-09
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 51 7e-08
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 33 0.016
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 33 0.021
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 32 0.037
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 28 0.60
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 27 0.80
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 27 1.1
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 3.2
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 3.2
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 25 4.3
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 5.6
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 5.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 24 7.4
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 24 7.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 24 7.4
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.4
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 24 9.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 9.8
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 24 9.8
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 99.5 bits (237), Expect = 2e-22
Identities = 54/93 (58%), Positives = 66/93 (70%), Gaps = 9/93 (9%)
Frame = +2
Query: 2 NVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVR 181
++PI+LV K DLRNDP I EL K Q PV +EG+A+A+KI A+ YLECSAK+ EGVR
Sbjct: 110 SLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVR 169
Query: 182 EVFETATRAAL-----QVK----KKKKTRCSLL 253
EVFE+ATRAA+ +VK KKK RC LL
Sbjct: 170 EVFESATRAAMLKHKPKVKPSSGTKKKKRCILL 202
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 97.9 bits (233), Expect = 5e-22
Identities = 51/91 (56%), Positives = 62/91 (68%), Gaps = 7/91 (7%)
Frame = +2
Query: 2 NVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVR 181
N+PI+LVG K DLRNDP TI EL K Q+P+ +EG+ +A+KI A+ YLECSAK EGV
Sbjct: 110 NLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVN 169
Query: 182 EVFETATRAAL-------QVKKKKKTRCSLL 253
EVFETA RA++ K KKK C LL
Sbjct: 170 EVFETAARASMLKFKPASVPKTKKKKHCILL 200
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 84.6 bits (200), Expect = 5e-18
Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 NVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVR 181
NVP ILVG K DLR+DP I E+R+ Q VK Q+ +A++I A Y+ECS+ + +GV
Sbjct: 112 NVPFILVGMKADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVD 171
Query: 182 EVFETATRAALQVK----KKKKTRCSLL 253
+VFE ATRAAL V+ K T+C ++
Sbjct: 172 DVFEAATRAALTVRDSENDKSSTKCCII 199
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 70.9 bits (166), Expect = 7e-14
Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = +2
Query: 5 VPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRE 184
VP ++VG + DLR+DP+ +L + Q P+ ++G +A ++ A Y+ECSA +++G++
Sbjct: 108 VPCLIVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKN 167
Query: 185 VFETATRAALQ--VKKKKKTRCSLL 253
VF+ A AAL V KKK++C +L
Sbjct: 168 VFDEAIVAALDPPVPHKKKSKCLVL 192
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 56.8 bits (131), Expect = 1e-09
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +2
Query: 8 PIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREV 187
PI+LVG K DLR D LR PV Q+ +++A +NA Y+ECSAK GV EV
Sbjct: 122 PIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNA-PYVECSAKENTGVNEV 180
Query: 188 FETATRAALQVKKK---KKTRCSLL 253
F+ A L +KK K C +L
Sbjct: 181 FQLA--VGLTIKKSFSFSKKSCVIL 203
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 50.8 bits (116), Expect = 7e-08
Identities = 31/75 (41%), Positives = 41/75 (54%)
Frame = +2
Query: 5 VPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRE 184
V ++LV K DLR +E + + + +EG A A+KINA YLECSAK GV E
Sbjct: 118 VKLVLVALKCDLRG----ADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNE 173
Query: 185 VFETATRAALQVKKK 229
F A R AL + +
Sbjct: 174 AFTEAARVALAAQPR 188
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 33.1 bits (72), Expect = 0.016
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +2
Query: 5 VPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRE 184
VPI++VGNK DL Q V +EG+A+A + A+ E SA+ E V
Sbjct: 112 VPIVVVGNKSDLH------------MQRAVTAEEGKALANEWKC-AWTEASARHNENVAR 158
Query: 185 VFE 193
FE
Sbjct: 159 AFE 161
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 32.7 bits (71), Expect = 0.021
Identities = 23/70 (32%), Positives = 32/70 (45%)
Frame = +2
Query: 8 PIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREV 187
P IL+GNK D + E ++M V + A + Y E SAK V+E
Sbjct: 119 PFILLGNKVD-------VEEQKRM----VSKSKALAFCQARGEIPYFETSAKEAINVQEA 167
Query: 188 FETATRAALQ 217
FET + AL+
Sbjct: 168 FETVAKLALE 177
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 31.9 bits (69), Expect = 0.037
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +2
Query: 2 NVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVR 181
NV IL+GNK D + Q V ++G+A+A+++ +LE SAK+ V
Sbjct: 114 NVYKILIGNKCDCED------------QRQVSFEQGQALADELGV-KFLEASAKTNVNVD 160
Query: 182 EVFETATRAALQVKKKK 232
E F T R ++KK+K
Sbjct: 161 EAFFTLAR---EIKKQK 174
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 27.9 bits (59), Expect = 0.60
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 8 PIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREV 187
P I+VGN+ D ++ R + + K + G M + E SAK V ++
Sbjct: 118 PFIIVGNQIDKDASKRAVSLHRAL--DYCKSKHGSNMI-------HFEASAKENTNVTDL 168
Query: 188 FETATRAALQ 217
FET +R AL+
Sbjct: 169 FETVSRLALE 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.5 bits (58), Expect = 0.80
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +2
Query: 8 PIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREV 187
P++LV NK DL + V EG +A+ ++ Y+E SAK + V E
Sbjct: 115 PVVLVANKCDLE------------AERVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEA 161
Query: 188 FETATRAALQVKKKKK 235
F + R + K ++
Sbjct: 162 FYSLVRTIRRYNKSEE 177
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 1.1
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +2
Query: 20 VGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETA 199
VG ++ A+ +K+K K + + A E KS E ++V ETA
Sbjct: 45 VGGVYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDV-ETA 103
Query: 200 TRAALQVKKKKKTR 241
AA KKKKK +
Sbjct: 104 AAAAAAAKKKKKNK 117
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 3.2
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 59 INELRKMKQEPVKPQEGRAMAEKINAF 139
+++ +K K+ P KP+E + + +N+F
Sbjct: 388 VDDNKKKKKGPAKPKEKATLGKTVNSF 414
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 3.2
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 56 TINELRKMKQEP-VKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 232
T +E++ K+EP +K QEG + EK+ + + AK + E + + +K
Sbjct: 211 TKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKI 270
Query: 233 KT 238
KT
Sbjct: 271 KT 272
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.0 bits (52), Expect = 4.3
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 5 VPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRE 184
+ I L GNK DL + + V+ + A A + N + E SAK+ E V E
Sbjct: 121 IVIALAGNKLDLAQE-----------RRAVEKADAEAYAAEANLL-FFETSAKTAENVNE 168
Query: 185 VFETATRAALQVKKK 229
+F TA L ++ K
Sbjct: 169 LF-TAIAKKLPLEDK 182
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 162 LAEHSRYANALIFSAIARPSCGFTGS 85
+AE S++ANA+ + + RPS +G+
Sbjct: 767 VAEASKFANAVGYPVLVRPSYVLSGA 792
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/59 (22%), Positives = 25/59 (42%)
Frame = +2
Query: 17 LVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFE 193
LV N D +++ + E +K+E ++ A + +EC +S E +E
Sbjct: 169 LVTNFNDQQDEVDELRERITLKEERIQQMRNEASQRRFEFKTTIECLEESSNRAIETYE 227
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 309 SGSMRTIHKSEFSRQQHTYSR 247
SG +RT+HK + +R + Y R
Sbjct: 3 SGPIRTLHKGKAARNRTPYDR 23
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 2 NVPIILVGNKKDLR 43
N+PI+L GNK D++
Sbjct: 113 NIPIVLCGNKVDVK 126
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 65 ELRKMKQEPVKPQE 106
E++KM++E +KPQE
Sbjct: 270 EVKKMQEEKIKPQE 283
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 24 ATKKTSATIPPPSTSF 71
+T+K S T+P P TSF
Sbjct: 139 STRKRSLTVPTPRTSF 154
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 164 FWQSIPDMQTR*SFQP*PGLPAVSQALASFC 72
FW +P++ T +F P GL A++ C
Sbjct: 386 FWNELPELITAVAFSPDGGL-AIAGTFVGLC 415
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 120 LKRLTRLHIWNALPKARKVYVR 185
LK + I N+L K RKVYVR
Sbjct: 2050 LKFEDEVDIMNSLQKPRKVYVR 2071
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +3
Query: 132 TRLHIW----NALPKARKVYVRCLKQQPEP 209
TR ++W NA P+ Y+R ++Q P P
Sbjct: 46 TRPYVWAVLLNAPPRNADEYIRYVRQGPSP 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,354
Number of Sequences: 5004
Number of extensions: 26592
Number of successful extensions: 89
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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