Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2a12
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 33 0.019
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 0.71
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.71
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 0.71
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 0.94
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 1.6
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 3.8
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 3.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.0
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 24 6.7
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 24 6.7
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 24 6.7
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 24 6.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 24 8.8
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 24 8.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 24 8.8
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 32.7 bits (71), Expect = 0.019
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +1
Query: 103 DVPNDXLEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCME 270
++ + L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E
Sbjct: 104 ELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLE 163
Query: 271 YAYQLWLRGSKD 306
A Q W + K+
Sbjct: 164 QAQQNWSKYIKE 175
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 0.71
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1
Query: 348 EDKSELNWETIPDDVL 301
EDKS+L +ETIPD VL
Sbjct: 18 EDKSKLPFETIPDPVL 33
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.71
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +2
Query: 98 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 277
+P + T S++TI+SS+P+T+ + + T +S + TT T ST
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560
Query: 278 INFGSGAPRTSSGIVSQLSSDLSSPKT 358
+ + S +S+ +S + S+P T
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTSTPVT 587
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 0.71
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 130 QLYNSVVVADYDSAVEKSKHLYEEKKS 210
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 0.94
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +2
Query: 104 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 283
+SLT+ +S ++ASSS T+ L +SI + + S S TT + S+ N
Sbjct: 107 SSLTSSSATSSSLASSST-TSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTN 165
Query: 284 FGSGAPRTSSGIVSQLSSDLSS 349
+ A TSS S LSS +S
Sbjct: 166 STTSATPTSSATSSSLSSTAAS 187
Score = 26.6 bits (56), Expect = 1.2
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 98 IPTSLTTFWRSSFTIASSSPITTVRLKRA-SIYTRRRRAKSSQMS*TN*YETTR*TAWST 274
+PTS TF S F S P ++ + S SS + T+ T+ + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731
Query: 275 PINFGSGAPRTSSGIVSQLSSDLSS 349
P++ S P + S S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756
Score = 24.2 bits (50), Expect = 6.7
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +2
Query: 104 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 283
T LT+ ++ T ASS+P+T+V A+ A S+ ++ N +T ++ + N
Sbjct: 357 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 410
Query: 284 FGSGAPRTSSGIVSQLSSDLSSPKTRLS 367
S P TSS + LSS S+ T S
Sbjct: 411 TSSVLP-TSSVSSTPLSSANSTTATSAS 437
Score = 24.2 bits (50), Expect = 6.7
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +2
Query: 104 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 283
T LT+ ++ T ASS+P+T+V A+ A S+ ++ N +T ++ + N
Sbjct: 471 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 524
Query: 284 FGSGAPRTSSGIVSQLSSDLSSPKTRLS 367
S P TSS + LSS S+ T S
Sbjct: 525 TSSVLP-TSSVSSTPLSSANSTTATSAS 551
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 269 STPINFGSGAPRTSSGIVSQLSSDLSSPKTRL 364
+T FGSG S G+ Q ++ S+P T L
Sbjct: 291 TTNTGFGSGTNNASGGLFGQNNNTTSTPSTGL 322
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 3.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 202 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLR 294
K+ +T+ NKL+ ++ + +YAY L L+
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 3.8
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 112 NDXLEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 261
N LE L + +VA S++EKSK LY+ K ++ +VV R ++MN
Sbjct: 276 NLGLEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 5.0
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 98 IPTSLTTFWRSSFTIASSSPITTVRLKRASI-YTRRRRAKSSQMS*TN*YETTR*TAWST 274
IPTS+ + SSFT +SSS TT+ S+ YT ++ S Y + S
Sbjct: 301 IPTSVPSSV-SSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSV 359
Query: 275 PINFGSGAPRTSSGIVSQLSSDLS 346
P + S SS + +S+ S
Sbjct: 360 PSSVSSFTSSNSSYTTTLTASNTS 383
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 86 RDATKRHRITIAGFIXGASSPVCYPRT 6
RDA K H++T +G + C P+T
Sbjct: 216 RDADKHHKLTTSGVTKMNITERCKPKT 242
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 RSWVTHRTRRSXDEARYSYSMSFRGIS 86
R +V RRS D + YSY + +GI+
Sbjct: 355 RLYVPRSHRRSSDRSHYSYVVIQKGIT 381
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 3 VRSWVTHRTRRSXDEARYSYSMSFRGISVCC 95
V SW T+++R++ A Y M IS+ C
Sbjct: 252 VASWETYQSRKAALTANDVYKMQPPNISLAC 282
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 RSWVTHRTRRSXDEARYSYSMSFRGIS 86
R +V RRS D + YSY + +GI+
Sbjct: 355 RLYVPRSHRRSSDRSHYSYVVIQKGIT 381
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 23.8 bits (49), Expect = 8.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 121 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN 252
LEE + V+ + A+ SK + ++ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 AVEKSKHLYEEKKSEVITNVVNKL-IRNN 252
A+E+ + Y ++ E +TN++N++ RNN
Sbjct: 845 ALEQIRVHYLIRRCEALTNIINRISFRNN 873
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 23.8 bits (49), Expect = 8.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 275 PINFGSGAPRTSSGIVSQLSSDLSS 349
P+N G A G++S LSS LSS
Sbjct: 930 PLNSGKPALSKEGGLLSALSSYLSS 954
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,697
Number of Sequences: 5004
Number of extensions: 22964
Number of successful extensions: 100
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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