Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a12
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           29   0.88 
12_01_0378 - 2946916-2947590                                           28   2.7  
10_08_0589 + 19022233-19022457,19022578-19022709,19023129-190232...    27   4.7  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    27   4.7  
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841     27   6.2  
03_01_0055 + 466834-467147,467521-467590,467669-467713,467801-46...    26   8.2  

>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 351 GEDKSELNWETIPDDVLGAPEPKLIGVLHAVHLVVSYQFVH 229
           GED++ LNWET     LGA      G+ H +H   + +FVH
Sbjct: 462 GEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 25  GLDAPXMKPAIVILCLFVASLYAADSDVPNDXLEEQLYNSVVVADYD 165
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>10_08_0589 +
           19022233-19022457,19022578-19022709,19023129-19023227,
           19023384-19023431,19023926-19023976,19024205-19024273,
           19024337-19024419,19024643-19024766,19024843-19024902,
           19024983-19025225,19025426-19025509,19025581-19025728,
           19025909-19025986,19025987-19026114,19026204-19026251,
           19026922-19027052,19027708-19027817,19028365-19028468,
           19028614-19028684,19029091-19029389,19029507-19029682
          Length = 836

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 52  AIVILCLFVASLYAADSDVPNDXLEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVV 231
           AIV L LFV SL   D+D+ N  L + + +S  +  Y   V+  +    +   +++ N  
Sbjct: 140 AIVSLMLFVESLQILDADI-NKSLVKSIQDSPELRRYREQVQVLESRLYQLMDKLVRNAD 198

Query: 232 NK 237
           N+
Sbjct: 199 NE 200


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 74   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 169
            +W + +L +P ++   W   + IASS  +T +
Sbjct: 1080 TWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 175 EKSKHLYEEK-KSEVITNV--VNKLIRNNKMNCMEYAYQLWLRGSKDIV 312
           +K++H    K K  V+ NV  +  L+ +N+M C E A+ +  +  K+IV
Sbjct: 62  KKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIV 110


>03_01_0055 +
           466834-467147,467521-467590,467669-467713,467801-467869,
           468006-468059,469010-469120,469225-469358,469438-469477,
           469790-469849,469934-470115,470290-470785
          Length = 524

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 76  VASLYAADSDVPNDXLE-EQLYNSVVVADYDSAVEKSKHLYEEKKSEVI 219
           + +LYA +  VPN+ LE E LY           V K + L EE    ++
Sbjct: 111 ITNLYAPEVAVPNNDLEKEVLYLRGKAESLGETVMKHEKLIEEMNERLV 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,164,150
Number of Sequences: 37544
Number of extensions: 154477
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)