Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a12
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.46 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.46 
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   1.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   1.4  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   4.3  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    27   4.3  
AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    27   5.7  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC006642-6|AAF39829.1|  146|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    26   7.5  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 157 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 267
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 157 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 267
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +1

Query: 37   PXMKPAIVILCLFVASLYAADSD-VPNDXLEEQLY--NSVVVADYDSAVEKSKH-LYEEK 204
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 205  KSEVITNVVNKLIRNNKMNCMEYAY 279
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +1

Query: 37   PXMKPAIVILCLFVASLYAADSD-VPNDXLEEQLY--NSVVVADYDSAVEKSKH-LYEEK 204
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 205  KSEVITNVVNKLIRNNKMNCMEYAY 279
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 64  LCLFVASLYAADSDVPNDXLEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 213
           LC F +       DV     EE+L +   VAD+   V++ K   +E+  E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 284 FGSGAPRTSSGIVSQLSSDL--SSPKT 358
           FG  APRT SG + Q S++L  S+PKT
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKT 171


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 131 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 229
           SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 131  SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 229
            SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 262 CMEYAYQLWL---RGSKDIVRDCFPVEFRLIFA 351
           C+ Y Y+L +     +KD+ RDCF   F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 296 APRTSSGIVSQLSSDLSSPKTRLSL 370
           A + SSG+VSQ+SS  SS + R +L
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTL 115


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 257 ILLFRISLFTTFVMTSLFFSSYK 189
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 154 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLRGSKDIVRDCFP 327
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L  S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 328 VEFRLIFA 351
           ++    FA
Sbjct: 88  IDMDAYFA 95


>AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical
           protein R06B10.5 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 132 LLLQXVVRDVGICSIQRCHEKT*NNY-SGLHLXSVESCVLPK 10
           LL+   VRD   C +Q CH+     Y SGL     +  +L K
Sbjct: 274 LLMHMPVRDAFYCFVQICHKYLPGYYSSGLEAVQTDGDILTK 315


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 214 VITNVVNKLIRNNKMNCMEYAYQLWLRGSKDIVRDCF 324
           ++  V+++L  N K+ C ++  QL       IVR+C+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 214 VITNVVNKLIRNNKMNCMEYAYQLWLRGSKDIVRDCF 324
           ++  V+++L  N K+ C ++  QL       IVR+C+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
 Frame = +2

Query: 2   SSFLGNTQDSTLX-R*SPL*LFYVFSWH--LCMLQIPTSLTTFWRSSFTIASSSPITTVR 172
           ++F  N +  TL     P  +  VF W+     L +  S   ++   F    + P TT  
Sbjct: 173 ATFSNNLEPDTLRLHPDPAIISRVFEWYSNATNLYVTPSQGVYYIQYFRADLNEPTTTST 232

Query: 173 LKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSGAPRTSSGIVSQLSSDLSSP 352
              A   T    A +S  + TN   TT     ST     + +P+TSS  VS  +S  SSP
Sbjct: 233 AYAAPSST----ASTSTPAPTNLPTTTGAPTNSTTNPPTATSPKTSSQPVSSSTSSTSSP 288


>AC006642-6|AAF39829.1|  146|Caenorhabditis elegans Hypothetical
           protein F49H12.3 protein.
          Length = 146

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 114 VRDVGICSIQRCHEKT*NNYSGLHLXSVESC 22
           +RD  IC +Q C  K  +NY    L    SC
Sbjct: 101 LRDQAICMLQLCSNKNDSNYINEMLAKSTSC 131


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 251 TR*TAWSTPINFGSGAPRTSSGIVSQLSSDL-SSPKTRLS 367
           T+   +  P+ FG G P+T + I ++++  L  + +T++S
Sbjct: 262 TKGRQYKGPVAFGDGLPKTGATIANKMAKSLVEAGRTKIS 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,713,665
Number of Sequences: 27780
Number of extensions: 132195
Number of successful extensions: 585
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)