Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a12
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   2.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   3.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   8.2  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 198 GEEERSHHKCREQTDTKQQDELHGV 272
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 EEERSHHKCREQTDTKQQDELH 266
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 EEERSHHKCREQTDTKQQDELH 266
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 124 EEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 234
           +EQL  S V ++Y    +   +   E ++  +TN+++
Sbjct: 475 QEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILS 511


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 17/86 (19%), Positives = 35/86 (40%)
 Frame = +1

Query: 37  PXMKPAIVILCLFVASLYAADSDVPNDXLEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV 216
           P +   +V+L   +         V     E+++ ++++   YD+ +  S     +  + V
Sbjct: 3   PGVLKLLVLLTFLLHPSRCTQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDGPAVV 61

Query: 217 ITNVVNKLIRNNKMNCMEYAYQLWLR 294
             N+  + I       MEY+ QL  R
Sbjct: 62  RVNIFVRSISKIDDVTMEYSVQLTFR 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,560
Number of Sequences: 438
Number of extensions: 1480
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)