Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2a11
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe... 27 2.7
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 27 3.6
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.6
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 4.7
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 4.7
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 6.2
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 6.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.2
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 8.2
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 25 8.2
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 25 8.2
>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +3
Query: 480 MSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHD 659
MS K ++ K + D P D ++D D L ++ + +D D S + + +HD
Sbjct: 1 MSEEPKKIDIKGKGRAIEDLIPDIDD--EEDDVDFQDLSSSGESDDSDDSMQEDYDDIHD 58
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 3.6
Identities = 7/33 (21%), Positives = 22/33 (66%)
Frame = +3
Query: 438 LRSEIDDLTANMIAMSANVKLLNQKYNNKHFND 536
++ ++D++ +++ +S+ + ++YN KH N+
Sbjct: 1 MKKDLDEIDTDIVTLSSFILQEQRRYNQKHKNE 33
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 321 LSGLRTASQNHHPSSSWTHPSLPSWFPFACTS 226
LSG+ P+SS TH S PS P TS
Sbjct: 241 LSGIIGPQMTKSPASSVTHFSTPSMLPIGGTS 272
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 552 DTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLH 656
D + +DED D ST + ++ K+ + + E +H
Sbjct: 407 DLVMSDEDDDDSTFSDKNSKDFKETEDMNGAEDMH 441
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 528 FNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLE 647
+ D+ +D +ED + D +D D S+ DSLE
Sbjct: 307 YPDYAVKQDETVVEEDGSSGEGDWEDVSDDSDNSSLDSLE 346
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 552 DTIYADEDQDLSTLETADKEEDKDKSNYDSLEKL 653
DT+ + + D T +T++K+E ++ + LEKL
Sbjct: 64 DTMEDENENDEDTEQTSEKKETEETPKENPLEKL 97
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 558 IYADE-DQDLST-LETADKEEDKDKSNYD 638
+YAD D +ST LE EEDK +S+Y+
Sbjct: 337 LYADSHDMGVSTPLEDGSSEEDKHQSDYN 365
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 567 DEDQDLSTLETADKEE----DKDKSNYDSLEKLHDITVLEED 680
DE++DL L A+K++ D+D+S + + ++ + E++
Sbjct: 4318 DEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDE 4359
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 207 LIPDPITMYTQKETMKEVKDASKNLM 284
L PDP +QK T+K+ K A L+
Sbjct: 771 LAPDPPPFTSQKITLKQTKQADMRLL 796
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 383 PNDSRSHRHYP--SFHSPIALVHCRASVLPLKITTHQVLGRILHFL 252
PN+S++ P F SP+ L RA V+PL++ + ++LH L
Sbjct: 16 PNESKTGNESPEKKFSSPVLLQ--RAKVIPLRLEYEE--RKLLHLL 57
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 191 HHCVNTAPANGRCHC 147
H+C T P GRC C
Sbjct: 283 HYCPETIPYTGRCAC 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,710
Number of Sequences: 5004
Number of extensions: 56531
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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