Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2a11
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619... 34 0.099
06_03_0671 + 23348958-23349101,23349475-23349834,23350003-233503... 30 2.1
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 29 2.8
11_06_0715 + 26552962-26553510,26553578-26555746 29 4.9
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 29 4.9
03_06_0195 + 32256771-32258792 29 4.9
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 28 6.5
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 28 6.5
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 28 8.6
>08_02_0199 -
14160881-14161054,14161151-14161306,14161802-14161921,
14162046-14162143,14162969-14163041,14164472-14164619,
14165108-14165232,14165611-14165652,14165757-14166074,
14166633-14167559,14167584-14167852,14167946-14168255,
14169281-14169465,14170795-14170901,14171320-14171486
Length = 1072
Score = 34.3 bits (75), Expect = 0.099
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 504 NQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNY 635
N K ++ +F+D+ Y DED D++ E AD+E D + S +
Sbjct: 488 NAKRDSANFSDYNDDSLPTYEDEDDDMTDGELADEENDDESSAF 531
>06_03_0671 +
23348958-23349101,23349475-23349834,23350003-23350302,
23350399-23350488,23353290-23353766
Length = 456
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 510 KYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEED 680
KY NK N+ +ED I + D LE K+ ++D N D + D + EED
Sbjct: 46 KYKNKIQNEEVVVEDDIGGGGEDDDDALEALFKQLEEDLKNDDLSVEDDDDGISEED 102
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/77 (23%), Positives = 29/77 (37%)
Frame = -2
Query: 416 HDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFLHGFLL 237
H+ + + Q P S Y P+ CRA + + + + R H +
Sbjct: 444 HNPEEAELQCVPKSFESAEEYIRVFEPLLFEECRAQLYSSYEESLESVSRDAHVMVRVKT 503
Query: 236 RVHRNRVWYECVLLGHH 186
R R WY+ V+L H
Sbjct: 504 VERRERGWYDVVVLPMH 520
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 441 RSEIDDLTANMIAMSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDK 620
+SEI +L ++ + L +K N K + DF+ + LS L+T E +
Sbjct: 621 KSEIQELPGGIVKLKKLRHLFAEKLNGKFWRDFQWSTGVRIHRGLEMLSELQTLQALEVQ 680
Query: 621 DKSNYDSLEKLHDI 662
D+ + SL +L +
Sbjct: 681 DERSVRSLRELRQM 694
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 549 EDTIYADEDQDLSTLETADKEEDKDKSNYDS-LEKLHDITVLEED 680
+DT DEDQD+S D EE+ D+ DS +++ +D++ ++D
Sbjct: 542 DDTEELDEDQDIS---DNDSEENDDELELDSDMDEENDVSESDDD 583
>03_06_0195 + 32256771-32258792
Length = 673
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 567 DEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEED 680
DE+ D +T D E D D+ +S E HD L++D
Sbjct: 203 DEESDYEEEDTTDLESDSDEDT-ESTESSHDEDDLDDD 239
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 534 DFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEK 650
DF MED DED D + ++EED+D+ D EK
Sbjct: 311 DFDDMEDDEEDDEDDD---EDEEEEEEDEDEDEDDEEEK 346
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/83 (21%), Positives = 40/83 (48%)
Frame = +3
Query: 420 EIHIARLRSEIDDLTANMIAMSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLET 599
E A++R + +++T M+ + Q+ + + + M +TIY +ED + S +
Sbjct: 618 EDEAAKIRRKKEEITDTMM-----FEKKRQEETRRRVDIKRRMLETIYKEEDMESSKRKF 672
Query: 600 ADKEEDKDKSNYDSLEKLHDITV 668
D+ + Y+ + KL D+ +
Sbjct: 673 VDQAAKLNDQRYELVLKLKDLLI 695
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 567 DEDQDLSTLETADKEEDKDKSNYDSLEKLHDIT 665
D + D L+ EE+ D YDS +LHDI+
Sbjct: 870 DGEYDYDNLDATTFEEEGDLLRYDSDVELHDIS 902
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,307,398
Number of Sequences: 37544
Number of extensions: 384291
Number of successful extensions: 1229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -