Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a11
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF099914-4|AAC68765.1|  236|Caenorhabditis elegans Hypothetical ...    30   1.4  
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein ( Cae...    28   5.8  

>U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical
           protein R11F4.3 protein.
          Length = 418

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +3

Query: 420 EIHIARLRSEIDDLTANMIAMSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLET 599
           E  I + +   + L  N +   ANV +L    N+ H N  KP    ++ DED  L   + 
Sbjct: 318 EEQIQKSQRFANSLQTNRVPNQANVGVLPP--NHSHENKEKPKLPPVFLDEDDSLEVAKD 375

Query: 600 ADKEED 617
              E+D
Sbjct: 376 VRTEDD 381


>AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical
           protein B0545.4 protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 558 IYADEDQDLSTLETADKEEDKDKSNYDS 641
           IY+D+D+ L  +   +KE+D+  SN DS
Sbjct: 63  IYSDQDEVLEFIRAVEKEDDEPYSNVDS 90


>Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical
           protein F58B3.4 protein.
          Length = 601

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 498 LLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDK--DKSNYDSLEK 650
           L  +K + K   D     D  + ++D D   LE AD EED+  D+ N D  E+
Sbjct: 88  LKKEKISKKTTKDEDDELDDFFDEKDDDEDALEDADDEEDEISDEENEDEEEE 140


>AF099914-4|AAC68765.1|  236|Caenorhabditis elegans Hypothetical
           protein C40A11.3 protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 489 NVKLLNQKYNNKHFNDFKPMED-TIYADEDQDLSTLETADKEEDKDKSNYDSLEKLH 656
           N+  + +KY NK    F P E+ T + DE       ++ D E+D   S  DSL  L+
Sbjct: 146 NIPEILEKYGNKLHIAFHPYEEFTGFVDEFLAEIVADSRDNEDDSANSEGDSLISLN 202


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 477 AMSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLS 587
           A  A++KL N++   K+ N   PME  +Y D     S
Sbjct: 38  ASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFS 74


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 422 LPHDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFLH 249
           L H ++  QR+ +  D  + ++ P  H+   L HC      L   T   +GR+ HF H
Sbjct: 413 LLHAHKCSQREKENRDFAA-KNQPPPHAACTLPHCSTMKEVLTHMTSCNVGRLCHFAH 469


>AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA, partial cds. ).
          Length = 118

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 422 LPHDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFLH 249
           L H ++  QR+ +  D  + ++ P  H+   L HC      L   T   +GR+ HF H
Sbjct: 17  LLHAHKCSQREKENRDFAA-KNQPPPHAACTLPHCSTMKEVLTHMTSCNVGRLCHFAH 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,842
Number of Sequences: 27780
Number of extensions: 330298
Number of successful extensions: 1424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)