Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a10
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    33   0.037
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.9  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   9.9  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 106 ADLPRHRLVQDQRIQIRLSVHCPNERDRISGARSAELRVHIRDLREGSL 252
           A L  H ++    ++ R + HCP E  + S  RS+ L+ HI  + EG++
Sbjct: 217 AHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 10   NERNENARFHCAINRVFAVGLQRPKPRPKSRPADLPRHRLVQDQR 144
            NE NENA         F+    R   RP +R     +H  +QD R
Sbjct: 954  NEENENASRTSGARFSFSSKASRLSARPSARTVPPLQHISIQDLR 998


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 7   LNERNENARFHCAINRVFAVGLQRPKPRPKSRPADLPRH 123
           L  R   A F+   +R    GLQ P+PR +S    LP H
Sbjct: 246 LIRRGYYAEFNVMYDRGTWFGLQAPEPRVESILMTLPLH 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,171
Number of Sequences: 5004
Number of extensions: 53219
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)