Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a07
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.23 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.1  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   5.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 748 NPGLYQYPHLLLSFGFSCPFSLGSF 674
           +PG   +P+ ++S G+S P S GS+
Sbjct: 120 SPGPPSHPYTVISNGYSSPMSSGSY 144


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 685 LGSFCHLFQASFFPWPLIFLT 623
           LG    LF    F WPL+F+T
Sbjct: 225 LGEMVGLFN-DIFGWPLVFIT 244


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 739 LYQYPHLLLSFGFSCPFSL 683
           L  YPHL   F FS P ++
Sbjct: 351 LNTYPHLFNFFEFSVPLAI 369


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 648 KKEA*KR*QKEPSEKGQEKPKERSKCGY*YR 740
           KKE  +  + EP  K ++    + K  Y YR
Sbjct: 214 KKEVKEEIEDEPDHKWKKNDSSKKKTRYYYR 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,462
Number of Sequences: 336
Number of extensions: 1379
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)