Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a07
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967...    29   5.7  
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415           28   7.5  

>10_06_0018 -
           9674771-9674995,9675079-9675126,9675471-9675530,
           9675693-9675758,9675844-9675906,9675985-9676032,
           9676150-9676215,9676493-9676558,9676660-9676725,
           9676822-9676887,9676975-9677058,9677310-9677654,
           9677738-9677833,9678129-9678332,9678434-9678726,
           9678833-9678958,9679217-9679226
          Length = 643

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 721 NVDIDIDQDSNEFLNVDILVEKIYNG 798
           N D+DID +SNE  +VDI V ++ NG
Sbjct: 25  NDDVDIDDESNEDTDVDINV-RVENG 49


>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
          Length = 126

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 615 RQEVKKIRGQGKKEA*KR*QKEPSEKGQEKPKERSK 722
           R E+KKI    KK+A  + +K+P +K  +K K++ K
Sbjct: 33  RAELKKILELRKKKAKAKVKKKPKKKKNKKAKKKKK 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,352,642
Number of Sequences: 37544
Number of extensions: 130542
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)