Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a05
         (277 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1EPR6 Cluster: Membrane protein TMS1; n=1; Bombyx mori...    34   0.53 
UniRef50_A7PD53 Cluster: Chromosome chr17 scaffold_12, whole gen...    32   2.2  
UniRef50_A3YH32 Cluster: Zinc-containing alcohol dehydrogenase s...    31   3.8  

>UniRef50_Q1EPR6 Cluster: Membrane protein TMS1; n=1; Bombyx
           mori|Rep: Membrane protein TMS1 - Bombyx mori (Silk
           moth)
          Length = 453

 Score = 34.3 bits (75), Expect = 0.53
 Identities = 20/41 (48%), Positives = 20/41 (48%)
 Frame = +1

Query: 151 MGAVLGLCSAAQLXXXXXXXXXXXXXXXXXXXTNSXXSRLM 273
           MGAVLGLCSAAQL                   TNS  SRLM
Sbjct: 1   MGAVLGLCSAAQLACCCGSTACSLCCSACPSCTNSTSSRLM 41


>UniRef50_A7PD53 Cluster: Chromosome chr17 scaffold_12, whole genome
            shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
            chr17 scaffold_12, whole genome shotgun sequence - Vitis
            vinifera (Grape)
          Length = 1582

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 254  ELVQDGHAEQHSEQAVXPQXHASCAAEQR 168
            E+    HA Q  EQ + P+ HAS AAE R
Sbjct: 1004 EICVSNHANQMEEQRIEPKNHASTAAEDR 1032


>UniRef50_A3YH32 Cluster: Zinc-containing alcohol dehydrogenase
           superfamily protein; n=1; Marinomonas sp. MED121|Rep:
           Zinc-containing alcohol dehydrogenase superfamily
           protein - Marinomonas sp. MED121
          Length = 332

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 232 LNNIVNKQXCHSXTPAVXQNKGPTLHPFLVFNSHXVLI 119
           LNN + ++  +S    V +    +L+PFL  NSH V I
Sbjct: 205 LNNYLGQKLAYSAVDTVSKKSAESLYPFLDVNSHLVTI 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,164,205
Number of Sequences: 1657284
Number of extensions: 2281294
Number of successful extensions: 3588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 575,637,011
effective HSP length: 69
effective length of database: 461,284,415
effective search space used: 10148257130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)