Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a05
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   1.1  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   1.5  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   2.0  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   8.0  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 254 ELVQDGHAEQHSE---QAVXPQXHASCAAEQRPNTAPISSF 141
           +L+ D  A QH     Q   P   AS +    P  AP+SSF
Sbjct: 174 KLLPDQSARQHQVLVGQTAIPTSEASSSINNTPLQAPVSSF 214


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 21  KSATEYFYVRLIISKYXYLLLGM*IVXHKTDXTINTX*ELKTRNGCS 161
           K+ TE  Y+R +IS+   + L M ++ HK    I+   E   RN  S
Sbjct: 407 KTTTE-MYLRQVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLS 452


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 35  IFLCAFNNIKIXILVTWNV 91
           +FLC    +   IL+ WNV
Sbjct: 333 LFLCVITTVSATILLAWNV 351


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 66  ILILLNAHKNIQLQIXXXCH 7
           +L +LN H   QL++   CH
Sbjct: 711 LLTILNLHDRSQLKLFEVCH 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,556
Number of Sequences: 5004
Number of extensions: 9865
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)