Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a05
         (277 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          21   6.4  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    21   6.4  
AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18...    21   8.5  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    21   8.5  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 227 QHSEQAVXPQXHASCAAEQRPNT 159
           QHS+Q   PQ   S    Q+P T
Sbjct: 135 QHSQQQQSPQQQQSSQQLQQPLT 157


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 254 ELVQDGHAEQHSEQAVXPQXHASCAAEQRPNTAP 153
           E VQ+G A+Q +   +    H     E+R    P
Sbjct: 867 EFVQNGSAKQFANDYINEVLHEDNEDEERQAAGP 900


>AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18D
           protein.
          Length = 380

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 253 NWCKMXMLNNIVNKQXCHSXTPAVXQNKGPTLHPFL 146
           N C   +L      Q C S TPA+       +HP+L
Sbjct: 340 NHCMFYILGVTSLGQVCGSSTPAIYTK----VHPYL 371


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 151 FLVFNSHXVLIVXSVLCXTIYIPSNK 74
           F+V +SH V    S++  T+ + S +
Sbjct: 739 FIVISSHKVHQKASIMAGTVQVESTR 764


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,516
Number of Sequences: 2352
Number of extensions: 2828
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 16167927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)