Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2a05
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   0.93 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   2.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   6.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   6.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 0.93
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 3   FNDXSXKSATEYFYVRLIISKYXYLLLGM 89
           + + S ++ T Y+   L +S   +L+LG+
Sbjct: 59  WRNPSMQTPTNYYLFNLAVSDLLFLILGL 87


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  KSATEYFYVRLIISKYXYLLLGM 89
           ++AT Y+   L IS    L+LG+
Sbjct: 72  QTATNYYLFSLAISDLILLVLGL 94


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 35 IFLCAFNNIKIXILVTWNV 91
          +FL   N  +I  + +WNV
Sbjct: 8  VFLALANGEEIKTIYSWNV 26


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 191 ASCAAEQRPNTAPISSF*LSXCVD 120
           ASC      NT  IS+   + CV+
Sbjct: 161 ASCCNSPENNTCSISNSYTNGCVE 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,161
Number of Sequences: 438
Number of extensions: 813
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)