Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p23
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    74   6e-15
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    73   1e-14
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   0.96 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   2.9  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 74.1 bits (174), Expect = 6e-15
 Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXX 178
           FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ             
Sbjct: 145 FNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQA 201

Query: 179 XXXXSSEAEYAKLLAQRKKESKVRRQ 256
                  AE+A+L+A+R  E+K +R+
Sbjct: 202 EKNREEAAEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 72.9 bits (171), Expect = 1e-14
 Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXX 178
           FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ             
Sbjct: 145 FNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQA 201

Query: 179 XXXXSSEAEYAKLLAQRKKESKVRRQ 256
                  AE+A+L+A+R  E+K +++
Sbjct: 202 EKNREEAAEFAQLMAKRVAEAKQKKE 227


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 336 VDHFCGALWLELLESRIEADRLRLIS 259
           +D F  + W+ L++SR + D+ RLIS
Sbjct: 335 LDEFFVSYWVSLIKSRKQKDKKRLIS 360


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 327 FCGALWLELLESRIEADRLRLISSW 253
           F G++W E L S      L+LI SW
Sbjct: 247 FTGSIWYEFLCSASSVVALQLIRSW 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,505
Number of Sequences: 5004
Number of extensions: 17325
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)