Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p23
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    72   1e-13
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    71   3e-13
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702...    29   1.2  
02_05_0956 - 33064104-33066425                                         28   2.1  
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813...    27   4.8  
10_05_0115 - 9300918-9300972,9301299-9301396,9301476-9301556,930...    26   8.4  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 43/90 (47%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2   FNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXX 175
           FNLSK+DDVR+YV   +R    K GK+ +K    APKIQRLVTP+ LQ            
Sbjct: 147 FNLSKDDDVRKYVNTYRRTFTTKNGKKVSK----APKIQRLVTPLTLQRKRARIADKKKR 202

Query: 176 XXXXXSSEAEYAKLLAQRKKESKVRRQEEI 265
                S  AEY KLLAQR KE + RR E +
Sbjct: 203 IAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 70.9 bits (166), Expect = 3e-13
 Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2   FNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXX 175
           FNL+K+DDVR+YV   +R    K GK+ +K    APKIQRLVTP+ LQ            
Sbjct: 147 FNLAKDDDVRKYVNTYRRTFTTKNGKKVSK----APKIQRLVTPLTLQRKRARIAQKKQR 202

Query: 176 XXXXXSSEAEYAKLLAQRKKESKVRRQEEI 265
                S  AEY KLLAQR KE + RR E +
Sbjct: 203 IAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>01_02_0020 -
           10269252-10269314,10269442-10269483,10269759-10270244,
           10270338-10270421,10270491-10270556,10270718-10270810,
           10270901-10271987,10273338-10273362,10273881-10273899
          Length = 654

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 220 CTEKEGIQGASPGRDQTQAVSFN 288
           C  KE IQGA+PG  Q Q +  N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 64 LGWEHAFDDITTYIIFFAKV 5
          +G EHA DD++TYII  A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42


>06_01_1036 +
           8134132-8134539,8134885-8134956,8134969-8135088,
           8135179-8135256,8135442-8135697,8136427-8136515,
           8137229-8137376,8137460-8137899,8138048-8138562,
           8138791-8139061,8139231-8139492,8139583-8139938
          Length = 1004

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 211 SIFSLRGLALSETLLLQSETMTSTLQNYRGD*PLDLRCL 95
           S+ SL+G A+    LLQS  + +T QN+     + LRCL
Sbjct: 515 SLQSLQGKAIEPLELLQSLLLPATKQNHDDVQRVALRCL 553


>10_05_0115 -
           9300918-9300972,9301299-9301396,9301476-9301556,
           9301635-9301726,9301832-9301859
          Length = 117

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 115 PLDLRCLMSGFSIFFSFLGWEHAFD 41
           P ++   ++GF +FFSFLG    FD
Sbjct: 8   PQEIGIGLTGFGVFFSFLGIIFFFD 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,830,855
Number of Sequences: 37544
Number of extensions: 114678
Number of successful extensions: 325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)