Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p23
         (375 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07881-1|AAA28871.1|  248|Drosophila melanogaster ribosomal prot...    91   4e-19
L02075-1|AAB05985.1|  248|Drosophila melanogaster ribosomal prot...    91   4e-19
L02074-4|AAB05982.1|  248|Drosophila melanogaster ribosomal prot...    91   4e-19
L01658-1|AAC34306.1|  248|Drosophila melanogaster ribosomal prot...    91   4e-19
AY058620-1|AAL13849.1|  217|Drosophila melanogaster LD31286p pro...    91   4e-19
AE014298-1080|AAF46288.1|  217|Drosophila melanogaster CG10944-P...    91   4e-19
AE014298-1079|AAN09219.1|  251|Drosophila melanogaster CG10944-P...    91   4e-19
AE014298-1078|AAN09218.1|  248|Drosophila melanogaster CG10944-P...    91   4e-19
L02074-3|AAB05984.1|  200|Drosophila melanogaster protein ( Dros...    30   1.1  
L02074-2|AAB05983.1|  200|Drosophila melanogaster protein ( Dros...    30   1.1  
BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p pro...    30   1.1  
BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p pro...    30   1.1  
AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-P...    30   1.1  
AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-P...    30   1.1  
AE014134-14|AAF51563.1|  445|Drosophila melanogaster CG11374-PA ...    27   7.9  

>L07881-1|AAA28871.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 145 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 201

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 202 ASKEASADYAKLLVQRKKESKAKREE 227


>L02075-1|AAB05985.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 145 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 201

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 202 ASKEASADYAKLLVQRKKESKAKREE 227


>L02074-4|AAB05982.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 145 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 201

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 202 ASKEASADYAKLLVQRKKESKAKREE 227


>L01658-1|AAC34306.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 145 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 201

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 202 ASKEASADYAKLLVQRKKESKAKREE 227


>AY058620-1|AAL13849.1|  217|Drosophila melanogaster LD31286p
           protein.
          Length = 217

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 114 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 170

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 171 ASKEASADYAKLLVQRKKESKAKREE 196


>AE014298-1080|AAF46288.1|  217|Drosophila melanogaster CG10944-PA,
           isoform A protein.
          Length = 217

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 114 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 170

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 171 ASKEASADYAKLLVQRKKESKAKREE 196


>AE014298-1079|AAN09219.1|  251|Drosophila melanogaster CG10944-PC,
           isoform C protein.
          Length = 251

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 148 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 204

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 205 ASKEASADYAKLLVQRKKESKAKREE 230


>AE014298-1078|AAN09218.1|  248|Drosophila melanogaster CG10944-PB,
           isoform B protein.
          Length = 248

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 48/86 (55%), Positives = 57/86 (66%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           +NLSKEDDVRR+VV+R LPA   K+N K   KAPKIQRL+TPVVLQ              
Sbjct: 145 YNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQI 201

Query: 182 XXXSSEAEYAKLLAQRKKESKVRRQE 259
               + A+YAKLL QRKKESK +R+E
Sbjct: 202 ASKEASADYAKLLVQRKKESKAKREE 227


>L02074-3|AAB05984.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 AEYAKLLAQRKKESKVRR 253
           AEY KLL +RKKESK  R
Sbjct: 165 AEYVKLLVKRKKESKANR 182


>L02074-2|AAB05983.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 AEYAKLLAQRKKESKVRR 253
           AEY KLL +RKKESK  R
Sbjct: 165 AEYVKLLVKRKKESKANR 182


>BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p
           protein.
          Length = 149

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 AEYAKLLAQRKKESKVRR 253
           AEY KLL +RKKESK  R
Sbjct: 114 AEYVKLLVKRKKESKANR 131


>BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p
           protein.
          Length = 147

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 AEYAKLLAQRKKESKVRR 253
           AEY KLL +RKKESK  R
Sbjct: 112 AEYVKLLVKRKKESKANR 129


>AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-PA
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 AEYAKLLAQRKKESKVRR 253
           AEY KLL +RKKESK  R
Sbjct: 100 AEYVKLLVKRKKESKANR 117


>AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-PA
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 AEYAKLLAQRKKESKVRR 253
           AEY KLL +RKKESK  R
Sbjct: 100 AEYVKLLVKRKKESKANR 117


>AE014134-14|AAF51563.1|  445|Drosophila melanogaster CG11374-PA
           protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -3

Query: 259 FLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTLQNYRGD*PLDLRCLMSGFS 80
           FL ++ G+L    K F++  +  +    +LLL  +  +  +  Y G   + LR +M   S
Sbjct: 9   FLMSNSGYLFKCYKYFNLPCITTILKFLSLLLPYKMESKCMSVYPGACTVALRRVMDAMS 68

Query: 79  IFF 71
           +F+
Sbjct: 69  LFY 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,696,932
Number of Sequences: 53049
Number of extensions: 183958
Number of successful extensions: 518
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)