Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p23
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    41   3e-04
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   3.3  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    26   7.6  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 27/79 (34%), Positives = 35/79 (44%)
 Frame = +2

Query: 2   FNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 181
           FNL+K DDV +YV+       +G      +  APKIQRL+TP  +               
Sbjct: 145 FNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPARIARKKYLLRQKRNQKI 200

Query: 182 XXXSSEAEYAKLLAQRKKE 238
                 A Y KLLA+  KE
Sbjct: 201 KMRDDAAAYHKLLAKYSKE 219


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 274 PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 137
           P F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 238 FLLSLCKQFSIFSLRGLALSETLLL 164
           FL+S    FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 17  EDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRL 118
           +DD RRY  K +    +   N KPR+K  K   +
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSKCSHI 309


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 11  SKEDDVRRYVVKRVLPAKEGKENAKPRHK 97
           S +D+V   VVK+    K GK++ KP+ K
Sbjct: 47  SSDDEVVVVVVKKDQKGKRGKKSKKPKKK 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,624,216
Number of Sequences: 27780
Number of extensions: 98230
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)