Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29p22
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 69 1e-12
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 57 2e-09
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 49 7e-07
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 38 0.001
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 36 0.005
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 31 0.14
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.57
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 28 1.7
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 3.0
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 27 3.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 4.0
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 27 4.0
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 4.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 5.3
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.3
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.3
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces... 25 9.3
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 68.5 bits (160), Expect = 1e-12
Identities = 41/99 (41%), Positives = 54/99 (54%)
Frame = +3
Query: 411 NFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARLRELHLQ 590
+ F L LY+ N+ LPPEIG LKNL IL N + +P ELG L LRE+ L
Sbjct: 176 DLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLF 235
Query: 591 GNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPPIEDQLK 707
N + V+P E+GTL +L +EGN P++D K
Sbjct: 236 DNMISVIPAELGTL---FQLKILGIEGN----PLQDVYK 267
Score = 46.4 bits (105), Expect = 5e-06
Identities = 30/95 (31%), Positives = 48/95 (50%)
Frame = +3
Query: 318 LYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLK 497
L N+ F L L + +NNL LP + +L L N + +PPE+G L
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227
Query: 498 NLQILSMRENDLIEVPRELGQLARLRELHLQGNRL 602
L+ + + +N + +P ELG L +L+ L ++GN L
Sbjct: 228 ELREVLLFDNMISVIPAELGTLFQLKILGIEGNPL 262
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 531 LIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 674
L V +L + + L EL++ N L LPPEIG L N +L GN
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKL---KNLVILDASGN 214
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 57.2 bits (132), Expect = 2e-09
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Frame = +3
Query: 291 RILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVL---PGNFFIMDSLRALYLGDND 461
RI ++L +N + G +L+ L Y N+ VL P + ++SL L + N
Sbjct: 53 RIARLALG--HNFIKSIGP-EILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNK 109
Query: 462 FEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDL 638
+ LP G L NL++LS+ +N L E+P + + L L ++ N +V PP I DL
Sbjct: 110 IKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHIVFPPPHIANNDL 168
Score = 55.2 bits (127), Expect = 1e-08
Identities = 37/114 (32%), Positives = 50/114 (43%)
Frame = +3
Query: 150 ITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSLPKLRILNVSLNKLYNL 329
I RL+L HN I + P SL L L IL++S NK+ L
Sbjct: 54 IARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQL 113
Query: 330 PRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN 491
P FG+ L++L ++ N L E LP M +L L + +N F PP I N
Sbjct: 114 PESFGALMNLKVLSISKNRLFE--LPTYIAHMPNLEILKIENNHIVFPPPHIAN 165
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 49.2 bits (112), Expect = 7e-07
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Frame = +3
Query: 261 PVSLSSLPK--LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL 434
P+ S L + L+ LN++ NKL+ LP L LDL+YNN P + L
Sbjct: 493 PLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNF--VTFPLIITELSQL 550
Query: 435 RALYLGDNDFEFLPPEIGNLKNLQILSMRENDLI-EVPRELGQLARLRELHLQGNRLVVL 611
L N + +IG+L L+ L ++ NDL +P+E+G L L + L N + +
Sbjct: 551 ETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNI 610
Query: 612 P-----PEIGTLDLASN 647
P++ ++++A N
Sbjct: 611 ASLSECPKLNSINVACN 627
Score = 36.7 bits (81), Expect = 0.004
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Frame = +3
Query: 267 SLSSLPKLRILNVSLNKL----YNLPRGF---GSFPVLEILD--LTYNNL------NEKV 401
SLS PKL +NV+ N L Y+ P SF L +D +Y+NL + K+
Sbjct: 612 SLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKL 671
Query: 402 LPGNFFIMDSL---RALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARL 572
+ ++++L + + N F + I ++NL+ LS ++ V LG+L L
Sbjct: 672 IGLKDSVIETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHL 731
Query: 573 RELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 674
L L N + + P E+ + S+ V+ L N
Sbjct: 732 VHLDLHANNIKIFPEEVWQV---SSLKVVNLSSN 762
Score = 34.7 bits (76), Expect = 0.015
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 9/186 (4%)
Frame = +3
Query: 72 NNPEIDLVDKGISSLEEIPGLFSLENITRLSLSHNK-ISVVPXXXXXXXXXXXXXXXXXX 248
+NP +D L I FS N+ +SH K I +
Sbjct: 635 SNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNH 694
Query: 249 XXXXPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMD 428
++S++ L+ L+ + ++ + G L LDL NN+ K+ P + +
Sbjct: 695 FTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNI--KIFPEEVWQVS 752
Query: 429 SLRALYLGDNDFEFLPPEIGNLKNL-----QILSMRE---NDLIEVPRELGQLARLRELH 584
SL+ + L N E + + K L Q+ MR N + + + + + EL+
Sbjct: 753 SLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEELY 812
Query: 585 LQGNRL 602
L NRL
Sbjct: 813 LVDNRL 818
Score = 25.4 bits (53), Expect = 9.3
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Frame = +3
Query: 264 VSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLN----EKVLPGNFFIMDS 431
+S ++ L L + N+L + P+ L LD++ NNL EK + +
Sbjct: 871 ISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQ 930
Query: 432 LRALYLGDND-FEFLPPEIGN-----LKNLQILSMRE 524
L L L N F F E N LKNL+ LS+ +
Sbjct: 931 LEYLNLSGNTWFRFSEHEDTNFTKSYLKNLKFLSIMD 967
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 38.3 bits (85), Expect = 0.001
Identities = 37/114 (32%), Positives = 50/114 (43%)
Frame = +3
Query: 270 LSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYL 449
+SSL L +L + NKL NL S P++ + L +N L + F LR LY+
Sbjct: 753 ISSLQNLMVLQLDNNKLTNLK---ASQPMIHLRILRISNNAIHQLEVDQF--PHLRTLYM 807
Query: 450 GDNDFEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVL 611
N F PP+I LK L S R D + +R L+L N V L
Sbjct: 808 DLNRFN-RPPDIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTL 860
Score = 33.9 bits (74), Expect = 0.027
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 3/168 (1%)
Frame = +3
Query: 102 GISSLEEIPGLFSLENITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSL 281
G + +EEI + SL+N+ L L +NK++ + +
Sbjct: 743 GNNEIEEIEEISSLQNLMVLQLDNNKLT---NLKASQPMIHLRILRISNNAIHQLEVDQF 799
Query: 282 PKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL--RALYLGD 455
P LR L + LN+ +N P + +++ ++ + + NF I SL R LYL +
Sbjct: 800 PHLRTLYMDLNR-FNRPPDIRR--LKRLVNFSFRTQDPEA--SNFVIQPSLDIRNLYLSN 854
Query: 456 NDFEFLPPEIGNLKNLQILSMRENDLIEVPRELG-QLARLRELHLQGN 596
N F L + L ++ L + L EVP+ + + LR L L N
Sbjct: 855 NTFVTLDCKHMFL-GVRYLELANVQLKEVPKYIATSMPNLRVLDLSHN 901
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 36.3 bits (80), Expect = 0.005
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 354 VLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN-LKNLQILSMREND 530
V + +D T N++ GNF M L+ L G+N + P+IG L NL+ LS+ +N
Sbjct: 42 VHDAIDFTDNDIRYL---GNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNH 98
Query: 531 LIEVPRELGQLARLREL 581
L E+ +L LA +L
Sbjct: 99 LQEI-ADLDPLASCPQL 114
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 489 NLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRL 602
+L++L L + N+L E+P LG+L +L L+L N++
Sbjct: 354 SLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.5 bits (63), Expect = 0.57
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 181 ILLWLRDRRVMFSRENKPGISSRLDIPLSTKSI 83
IL W+ + MFSR+ P ++S L +P K I
Sbjct: 89 ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 136 NKPGISSRLDIPLSTKSISGLFISLASSITFLAFDILPVF 17
NKP D+ S +G+F SL T+ A D LP +
Sbjct: 201 NKPAYFGSKDLKQSAPLFTGIFSSLDDIPTYSASDYLPAY 240
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 441 KHGDCP**RSSQVILFHSNYCMLDPIS 361
+HG P SS ++ ++ NYC P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 364 ISSTGKEPKPLGKLYSLFNETLRILNLGSDDK 269
I STG++PK LGK Y E + I N+ D K
Sbjct: 208 IFSTGRQPKILGKPYDEMMEAI-IANVNFDRK 238
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = +2
Query: 29 DVES*KSY*RSQRNK*SGNRFSRQRNI*SRRDSRLIFSGEHHSSVPKPQQNLCSACCTSQ 208
D ES +S +S RN+ + FSR++N R + ++ S +Q L + S
Sbjct: 181 DPESDQSI-KSSRNRRRESSFSREKNPDLTRSDSIHYTANTRLSEKFEEQGLAYSTIFSH 239
Query: 209 LEQLRNSKLGQ*QHSRASSQLIITTQVKD 295
+E + + L+ITT VK+
Sbjct: 240 IESFPITGSTSFDSILGNGVLVITTLVKE 268
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 306 SLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 410
S KL+++ + FG F VLE + Y L E+ + G
Sbjct: 81 SNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 633 DLASNK-SVLRLEGNFWVPPIEDQLKLGPSHVL 728
+LA K ++L ++ F PPI+D L LG +V+
Sbjct: 175 ELAKKKGAILVVDSTFAPPPIQDALVLGADYVV 207
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 5.3
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = -2
Query: 535 IRSFSRIDKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFP-GNTFS---FKLLYVRS 368
+ S +DK+ K+ + + YK +R SI++KFP N S LL
Sbjct: 152 LNSLDNLDKV----KYLLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSI 207
Query: 367 NISSTGKEPKPLGKLYSLFNETLRILN 287
+ + T K+ + L ++ N +L +L+
Sbjct: 208 SYAQTEKQEAKVTPLLAIINMSLVLLS 234
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 514 DKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFPGNTFSFKL 383
+K+ + I GGRNS SL+P A + + FP + SF L
Sbjct: 681 EKLMSPYNKSIGGGRNSNSLTP--NANLGADVSFFPTDDTSFLL 722
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 730 SSTWDGPSLSWSSMGGTQKLPSSLSTDLLLARSNVPISGG 611
+S WD + S + G L SLS D+ RSN P+ G
Sbjct: 165 TSDWDEQNEYVSEVEGDYNLLGSLSNDIQF-RSNPPVISG 203
>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 160
Score = 25.4 bits (53), Expect = 9.3
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 534 IEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWV--PPIEDQLK 707
+++P E G++ L++ H+ + + P I D +SNKS + G F V P E +
Sbjct: 51 VDIPAEDGEMGILKD-HVPMIQCLK-PGVISVTDESSNKSKYFISGGFAVQQPSNELSIT 108
Query: 708 LGPSHVLDYLRSETYKVLYSRH 773
+ ++ L+ S L +H
Sbjct: 109 VPEAYKLEDFSSSVANQLLEKH 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,076
Number of Sequences: 5004
Number of extensions: 64510
Number of successful extensions: 211
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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