Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p18
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   3.3  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       24   5.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    24   5.8  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   7.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   7.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    23   7.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    23   7.7  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    23   7.7  

>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 168 ISSRLPERPPCRLRQSHILQL 230
           I   L E   CR+R  H+LQL
Sbjct: 496 IDRHLKEYDSCRVRMEHVLQL 516


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 177 RLPERPPCRLRQSHILQL 230
           R PERPP RL +  ++ L
Sbjct: 96  RFPERPPSRLNKIQVMIL 113


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -2

Query: 230 ELKDVTLAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLR--PLEPS 66
           EL+  T A P   P   P   P    PI  + PP+P    PP  P   ++  P  PS
Sbjct: 136 ELRPPTSAPPR--PSIPP-PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 181 CQRGHPAGFARVTSFNSWIRARI*LTNDQ*FNNKIIS 291
           C+RG   GF+ +    +++  +   T+D+ FN  I++
Sbjct: 285 CERGTKRGFSLIQRARTFLLQKSKNTSDKQFNAHIVA 321


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 181 CQRGHPAGFARVTSFNSWIRARI*LTNDQ*FNNKIIS 291
           C+RG   GF+ +    +++  +   T+D+ FN  I++
Sbjct: 285 CERGTKRGFSLIQRARTFLLQKSKNTSDKQFNAHIVA 321


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 237 DPGVEGCDSGEAGRVASLATLS 172
           +P   GCD+G  G V S +T S
Sbjct: 827 NPSQYGCDNGALGPVQSSSTTS 848


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 171 SSRLPERPPCRLRQSHILQL 230
           + RLP R  CR+ QS  +Q+
Sbjct: 825 TQRLPSRENCRILQSMAIQM 844


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 248 ILARIQELKDVTLAKPAGWPLWQP*ADPND 159
           I+ R  ++KD+ + +PA  P   P   PND
Sbjct: 64  IVFRGSDVKDLRIEEPATTPSAPPVQPPND 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,572
Number of Sequences: 5004
Number of extensions: 18391
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)