Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p18
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    48   1e-06
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    38   0.001
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    38   0.001
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    38   0.002
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    37   0.003
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   2.6  
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    27   3.4  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        26   4.5  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    26   4.5  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    26   4.5  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    26   4.5  
AC006625-13|ABI18147.1|  273|Caenorhabditis elegans Abnormal che...    26   4.5  
AC006625-12|AAK68272.2|  214|Caenorhabditis elegans Abnormal che...    26   4.5  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    26   6.0  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    25   7.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +1

Query: 46  IASTLCVDGSNGR-STCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQR-GHPAGFARVT 219
           + S LC   S G+  +C GDSGGPL     G  +L G+ S+G   GC R G P  +  V 
Sbjct: 221 LPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGI--GCARPGMPGVYGNVH 278

Query: 220 SFNSWI 237
           S ++WI
Sbjct: 279 SASTWI 284


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +1

Query: 34  NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 207
           ++ I A+++ V   +   TC GDSGG L     + G   LI ITSFG+ +GC     A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274

Query: 208 ARVTSF 225
            RV  +
Sbjct: 275 TRVDMY 280


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 79  GRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-QRGHPAGFARVTSFNSWIRARI 249
           G  +C GDSGGP       G+  L G+ S+G   GC Q+  P  +  V  + SWI A I
Sbjct: 204 GIDSCQGDSGGPFACRREDGAFVLAGVISWG--DGCAQKKQPGIYTMVAPYLSWISAII 260


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 4   TNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGITSFGS 171
           T A C   +G ++   S  C      ++ CSGDSGG LT     S +  +I I S+GS
Sbjct: 242 TLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGS 298


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +1

Query: 70  GSNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-----QRGHPAGFARVTSFNS 231
           G+    T  GDSGGPL I  S G    IGITS+G A G      Q   P  + R++ +  
Sbjct: 218 GAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYG-ADGLDGVIDQGKFPGVYTRISKYVP 276

Query: 232 WIRARI 249
           WI+  I
Sbjct: 277 WIQGVI 282


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +1

Query: 49   ASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRG 192
            A+TL   G   RST SG   G  + GSG      G T+ GS  G   G
Sbjct: 1126 ATTLST-GDAVRSTTSGSGSGQSSTGSGAGGS--GTTASGSGSGGSSG 1170


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +1

Query: 49   ASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRG 192
            A+TL   G   RST SG   G  + GSG      G T+ GS  G   G
Sbjct: 1126 ATTLST-GDAVRSTTSGSGSGQSSTGSGAGGS--GTTASGSGSGGSSG 1170


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 70  GSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSA 174
           GS G     G SGG    G+GG+R      S+GS+
Sbjct: 464 GSGGYGAGGGGSGGYGAGGAGGARNSASNGSYGSS 498


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 4   TNAVCARTFGNNVIIASTLCVDGSNGRST---CSGDSG 108
           TN  C     N    AS++CV  +NG+     CS  SG
Sbjct: 38  TNLFCTSVGSNTDCPASSICVTAANGQGVLICCSQPSG 75


>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +1

Query: 28  FGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAGF 207
           FG N  +        + G    SG++GG    GSG +    G T FGS      G  +G 
Sbjct: 58  FGGNNNVGPRFGNGNAGGTGFGSGNAGGT-GFGSGNA----GGTGFGSGNAGGTGFGSGN 112

Query: 208 ARVTSFNS 231
           A  T F S
Sbjct: 113 AGGTGFGS 120


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
           protein.
          Length = 974

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +1

Query: 28  FGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAGF 207
           FG N  +        + G    SG++GG    GSG +    G T FGS      G  +G 
Sbjct: 58  FGGNNNVGPRFGNGNAGGTGFGSGNAGGT-GFGSGNA----GGTGFGSGNAGGTGFGSGN 112

Query: 208 ARVTSFNS 231
           A  T F S
Sbjct: 113 AGGTGFGS 120


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  GSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQG 180
           GS+G ++  G+S G    GSG  + +  I S G   G
Sbjct: 562 GSSGEASEEGESSGSEDQGSGNYKMIESIESSGEFSG 598


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  GSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQG 180
           GS+G ++  G+S G    GSG  + +  I S G   G
Sbjct: 562 GSSGEASEEGESSGSEDQGSGNYKMIESIESSGEFSG 598


>AC006625-13|ABI18147.1|  273|Caenorhabditis elegans Abnormal
           chemotaxis protein 1,isoform b protein.
          Length = 273

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 137 LPPLPMVRGPPESPLQVLRPLEPSTQR 57
           + P P +R P + PL V RP+  ST +
Sbjct: 138 MDPTPSLRLPKKEPLPVQRPMARSTPK 164


>AC006625-12|AAK68272.2|  214|Caenorhabditis elegans Abnormal
           chemotaxis protein 1,isoform a protein.
          Length = 214

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 137 LPPLPMVRGPPESPLQVLRPLEPSTQR 57
           + P P +R P + PL V RP+  ST +
Sbjct: 79  MDPTPSLRLPKKEPLPVQRPMARSTPK 105


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
           protein Y43D4A.5 protein.
          Length = 1648

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +1

Query: 52  STLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGIT---SFGSAQGCQRG 192
           S L        S+  G S GPL+ GSG +    G     SFGS  G   G
Sbjct: 651 SDLAPAAPGSASSQPGLSDGPLSFGSGNAPSEFGPVPSGSFGSPAGSNNG 700


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 106 GGPLTIGSGGSRQLIGITSFGSAQGCQ 186
           GGPL     G   +IG+ + GS + C+
Sbjct: 237 GGPLVQNVSGKATVIGLKAPGSRENCE 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,705,371
Number of Sequences: 27780
Number of extensions: 121572
Number of successful extensions: 593
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)