Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p18
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    41   4e-06
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.84 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   1.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   2.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   2.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   7.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 40.7 bits (91), Expect = 4e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
 Frame = +1

Query: 1   ITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQL--IGITSFGSA 174
           +T   C + +GN  I+ + +C   + G+  C  DSGGP+   +  +++L  IGI S+G+ 
Sbjct: 318 LTQVECYKYYGN--IMVNAMCAY-AKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAE 374

Query: 175 QGCQRGHPAGFARVTSFNSWI 237
            G    +P G  +V S+  WI
Sbjct: 375 CG---KYPNGNTKVGSYIDWI 392


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 25  TFGNNVIIASTL-CVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQG 180
           T G +V+++    C D   G  + S  +GG +T  SGGS  ++G  + G   G
Sbjct: 2   TKGRHVVMSCCCWCCDNLGGPGSSS--AGGVVTGASGGS-IVVGANNGGGGGG 51


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 138 PSTDRYHIVRISSRL 182
           P+T+ Y+I+ +++RL
Sbjct: 116 PNTEEYYIIEVNARL 130


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 258 RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 157
           RQ N +   GV+GCD    GR      ++  ERC
Sbjct: 101 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 133


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 258 RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 157
           RQ N +   GV+GCD    GR      ++  ERC
Sbjct: 102 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 134


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/49 (24%), Positives = 18/49 (36%)
 Frame = -2

Query: 152 PIS*RLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTAL 6
           P+S  +PP P  +  P++      P  P    +       P V   T L
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTIL 807


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 141 STDRYHIVRISSRLPERPPCRLRQSHILQLL 233
           +T R        RLP  PP R+R+   + LL
Sbjct: 624 TTKRDGTQETEERLPPLPPKRIRKMPSMPLL 654


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 159 IVRISSRLPERPP 197
           I+R +SR P RPP
Sbjct: 116 IIRRNSRYPLRPP 128


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 206 SPESHPSTP 232
           +P  HPSTP
Sbjct: 127 TPNGHPSTP 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,193
Number of Sequences: 438
Number of extensions: 1633
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)