Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p14
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               32   0.45 
SB_47560| Best HMM Match : CM_2 (HMM E-Value=0.82)                     30   2.4  
SB_42596| Best HMM Match : Glyco_hydro_85 (HMM E-Value=0)              30   2.4  
SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16)                 30   2.4  
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)                  29   4.2  
SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)               29   5.5  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 568 QEIAASNTSPRR*VVLRRRCTPRPHIAPVPRSLQPDP 458
           QE++ S    +R  +LR  C    H+ P+P S +P P
Sbjct: 458 QEVSFSQRFQKRGSILRELCIHAKHVQPIPASTRPPP 494


>SB_47560| Best HMM Match : CM_2 (HMM E-Value=0.82)
          Length = 384

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 562 SPARQPQNERASTDTHQIDDPIHVISMPDEETMQQKPPDYDTVA 693
           +P RQP    A TDT  I DP  V+ M  +++  +   D  TV+
Sbjct: 302 TPGRQPTPFPADTDTVVIRDPKAVLKMKKKDSCSKYSKDGQTVS 345


>SB_42596| Best HMM Match : Glyco_hydro_85 (HMM E-Value=0)
          Length = 753

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 712 HTXAVLPPQCRSLAAFVASSPRLALILREWD 620
           H    +PP C + AA   S P L  I+ EWD
Sbjct: 238 HHFITIPPPCWTNAAHTNSVPVLGTIITEWD 268


>SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16)
          Length = 299

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 616 DDPIHVISMPDEETMQQKPPDYDTVAGAPPTYDDAIKLNP 735
           D P      P    ++   P Y+ V  AP  Y+DA + NP
Sbjct: 181 DQPSSGYMQPPPAALEYSAPSYNQVQSAPQQYNDAEQSNP 220


>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
          Length = 696

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +2

Query: 431 YVRER*STGWVWLKTTRNRC-----DMWAWRASSPEHYSSARRC 547
           YV+E  +T  VWLKT+ N C       W+ + ++P+++   R+C
Sbjct: 417 YVQE--TTYAVWLKTSANSCMRGRPCSWSHKRTTPKNHRDERKC 458


>SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 616 DDPIH-VISMPDEETMQQKPPDYDTVAGAPPTYDDAIKLNP 735
           ++P++  I M D     ++     TV G PPTY  ++ LNP
Sbjct: 421 NEPLNPCIQMSDVRADIEEEEFIATVVGPPPTYSSSLPLNP 461


>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 521 EHYSSARRCVAGCNLLLGSRKTNGLRLIHIRSTI 622
           +H  S +  + GC+LL   ++ N L  +H+R+ +
Sbjct: 341 DHSQSCQELIRGCDLLERQQRKNTLLTLHVRALV 374


>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
          Length = 905

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 556 LQSPARQPQNERASTDTHQIDDPIHVISMPDEETMQQK--PPDYDTVAGAPPT 708
           L  P  QP+N+ A+ D+ + D        P+   +     PP   T+ G PPT
Sbjct: 325 LGQPTPQPKNDTANRDSAKADPKQPEKEAPNSGALIPNIPPPGMQTLMGLPPT 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,328,977
Number of Sequences: 59808
Number of extensions: 493743
Number of successful extensions: 1200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)