Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p14
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF038609-5|AAK29796.2|  168|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 237 RKYYSIIRGVRLRFAQIQHSKLILKNG 317
           +KY+SI++G ++    + +SKLI KNG
Sbjct: 786 QKYWSILKGFQIIIGSVLNSKLINKNG 812


>Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical
           protein F14E5.6 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 266 TLEICTNSA**ANFEEWVTS*EVPSCSA*EEKMTKACH*TKADNHKGHTGMAWCC 430
           T+ I TN A   N ++ + +  V SC   E  M KAC   +ADNH+  + + + C
Sbjct: 192 TVPITTNHA---NQDKLLNT-PVHSCDIFESAMEKACPNLEADNHRDESAIMYEC 242


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 539  AQMSSAPATMHATPTYRTGSA*SSARPSQLISAPAHNNTM 420
            A  S  P+   +TPT  TGS  SS   S  IS    + TM
Sbjct: 1409 ASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHTTM 1448


>AF038609-5|AAK29796.2|  168|Caenorhabditis elegans Hypothetical
           protein C54E4.4 protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
 Frame = +1

Query: 496 VGVACIVAGALLICAAMCCWLQSPARQPQNERASTDTHQIDDPIHVISMPDEETMQQKP- 672
           + + C+V    L C  +     +  RQ   +R      ++  P   +S P  +T++    
Sbjct: 31  IAIVCVVI--TLFCMLVNNRRNARTRQRTQQRQGQTVLRLS-PASALSSPTGDTVRPASF 87

Query: 673 -------PDYDTVAGAPPTYDDAIK 726
                  P YD    APP+Y+DA++
Sbjct: 88  PPMYIVSPSYDPKFDAPPSYEDAVR 112


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 497 WAWRASSPEHYSSARRCVAGC-NLLLGS 577
           W+W +S     S    C+A C NLL GS
Sbjct: 775 WSWHSSKANEQSKFNDCLAQCQNLLAGS 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,748
Number of Sequences: 27780
Number of extensions: 364295
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)