Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p04
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38945-1|AAB01737.1|  173|Homo sapiens CDKN2A protein.                 31   3.5  
BC033799-1|AAH33799.1|  792|Homo sapiens host cell factor C2 pro...    31   4.6  
BC006558-1|AAH06558.1|  412|Homo sapiens HCFC2 protein protein.        31   4.6  
AK223342-1|BAD97062.1|  792|Homo sapiens host cell factor C2 var...    31   4.6  
AF117210-1|AAD27814.1|  792|Homo sapiens host cell factor 2 prot...    31   4.6  
AF078533-1|AAC28380.1|  377|Homo sapiens evolutionarily related ...    31   6.1  
U26727-1|AAA82236.1|  132|Homo sapiens p16INK4/MTS1 protein.           30   8.1  
S78535-1|AAC60649.1|  179|Homo sapiens tumor supressor protein.        30   8.1  
BT007020-1|AAP35666.1|  132|Homo sapiens cyclin-dependent kinase...    30   8.1  
AL449423-3|CAH70601.1|  173|Homo sapiens cyclin-dependent kinase...    30   8.1  
AF527803-1|AAM77919.1|  173|Homo sapiens cyclin-dependent kinase...    30   8.1  

>U38945-1|AAB01737.1|  173|Homo sapiens CDKN2A protein.
          Length = 173

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 542 PLGTSAAAGDRQREIRRGRHGVL--LQRCRGGLRGSTSSA 655
           P G +AAA  R  ++RR RH  L   +RC GGL G    A
Sbjct: 113 PSGGAAAAPRRGAQLRRPRHSHLTRARRCPGGLPGHAGGA 152


>BC033799-1|AAH33799.1|  792|Homo sapiens host cell factor C2
           protein.
          Length = 792

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 370 SWPAPSKASTIPLPRELWLREGIGNTQSTWYARADVTTHQEEQQLETPH 224
           SW  P    T+PLPR L     IGN     Y       H+ E    +PH
Sbjct: 231 SWSKPETKGTVPLPRSLHTASVIGNKM---YIFGGWVPHKGENTETSPH 276


>BC006558-1|AAH06558.1|  412|Homo sapiens HCFC2 protein protein.
          Length = 412

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 370 SWPAPSKASTIPLPRELWLREGIGNTQSTWYARADVTTHQEEQQLETPH 224
           SW  P    T+PLPR L     IGN     Y       H+ E    +PH
Sbjct: 231 SWSKPETKGTVPLPRSLHTASVIGNKM---YIFGGWVPHKGENTETSPH 276


>AK223342-1|BAD97062.1|  792|Homo sapiens host cell factor C2
           variant protein.
          Length = 792

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 370 SWPAPSKASTIPLPRELWLREGIGNTQSTWYARADVTTHQEEQQLETPH 224
           SW  P    T+PLPR L     IGN     Y       H+ E    +PH
Sbjct: 231 SWSKPETKGTVPLPRSLHTASVIGNKM---YIFGGWVPHKGENTETSPH 276


>AF117210-1|AAD27814.1|  792|Homo sapiens host cell factor 2
           protein.
          Length = 792

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 370 SWPAPSKASTIPLPRELWLREGIGNTQSTWYARADVTTHQEEQQLETPH 224
           SW  P    T+PLPR L     IGN     Y       H+ E    +PH
Sbjct: 231 SWSKPETKGTVPLPRSLHTASVIGNKM---YIFGGWVPHKGENTETSPH 276


>AF078533-1|AAC28380.1|  377|Homo sapiens evolutionarily related
           interleukin-1beta converting enzyme protein.
          Length = 377

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 24/89 (26%), Positives = 40/89 (44%)
 Frame = +3

Query: 306 PSRSHNSLGKGIVDALLGAGHEVTWATPFPPKESTKGLKIIDVSATASVSEMIDMNDQRN 485
           P +   SLGK ++  LL    +         +E  K  KI D         ++D   Q+N
Sbjct: 10  PLKMLESLGKELISGLLD---DFVEKNVLKLEEEEKK-KIYDAKLQDKARVLVDSIRQKN 65

Query: 486 ADAGIALIRTFAANITRLSLSVPALQQAI 572
            +AG   ++TF  NI + S S+ A ++ +
Sbjct: 66  QEAGQVFVQTF-LNIDKNSTSIKAPEETV 93


>U26727-1|AAA82236.1|  132|Homo sapiens p16INK4/MTS1 protein.
          Length = 132

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 542 PLGTSAAAGDRQREIRRGRHG--VLLQRCRGGLRGSTSSA 655
           P G +AAA  R  ++RR RH      +RC GGL G    A
Sbjct: 72  PSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGA 111


>S78535-1|AAC60649.1|  179|Homo sapiens tumor supressor protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 542 PLGTSAAAGDRQREIRRGRHG--VLLQRCRGGLRGSTSSA 655
           P G +AAA  R  ++RR RH      +RC GGL G    A
Sbjct: 119 PSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGA 158


>BT007020-1|AAP35666.1|  132|Homo sapiens cyclin-dependent kinase
           inhibitor 2A (melanoma, p16, inhibits CDK4) protein.
          Length = 132

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 542 PLGTSAAAGDRQREIRRGRHG--VLLQRCRGGLRGSTSSA 655
           P G +AAA  R  ++RR RH      +RC GGL G    A
Sbjct: 72  PSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGA 111


>AL449423-3|CAH70601.1|  173|Homo sapiens cyclin-dependent kinase
           inhibitor 2A (melanoma, p16, inhibits CDK4) protein.
          Length = 173

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 542 PLGTSAAAGDRQREIRRGRHG--VLLQRCRGGLRGSTSSA 655
           P G +AAA  R  ++RR RH      +RC GGL G    A
Sbjct: 113 PSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGA 152


>AF527803-1|AAM77919.1|  173|Homo sapiens cyclin-dependent kinase
           inhibitor 2A, p14ARF protein.
          Length = 173

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 542 PLGTSAAAGDRQREIRRGRHG--VLLQRCRGGLRGSTSSA 655
           P G +AAA  R  ++RR RH      +RC GGL G    A
Sbjct: 113 PSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGA 152


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,681,490
Number of Sequences: 237096
Number of extensions: 2409702
Number of successful extensions: 8949
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8944
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)