Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p03
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 374 FVVLTYYILCSICLI*FMFTVCISDTDAY 288
           F +L  Y +   CL+  MF  CI+ + A+
Sbjct: 442 FQLLDSYAVSGFCLLFLMFFECIAISWAF 470


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 374 FVVLTYYILCSICLI*FMFTVCISDTDAY 288
           F +L  Y +   CL+  MF  CI+ + A+
Sbjct: 495 FQLLDSYAVSGFCLLFLMFFECIAISWAF 523


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 486 FNNY*DNKIKRFTK*LYFQD 427
           +NNY +N    + K LY+++
Sbjct: 330 YNNYNNNNYNNYNKKLYYKN 349


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 404 CTIPSFIHCFFVVLTYY 354
           C +PSF+  F  VL+++
Sbjct: 124 CVVPSFVADFVKVLSWH 140


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 256 LFRKRTEARPPSKTPLPVFTMPSVRHM 176
           LF+  +  +P  + PLP  T P   +M
Sbjct: 29  LFKAGSAEQPKEQEPLPPVTPPQGENM 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 255 FLERELRQDHPVK 217
           FLERELR+ H  K
Sbjct: 613 FLERELRKAHQEK 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,379
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)