Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p01
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    29   0.74 
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   5.2  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.2  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 532 SYCNKLL*FHGCGKS*EGASSC*W*SLDKM*IVLNIPSIIMLLNVAK 672
           SYCN L+  H   +S EGA+ C    LD     +N+     ++ +AK
Sbjct: 457 SYCNTLIFLHRLNESVEGANIC----LDTARRAINVLKFFFIIPIAK 499


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 503 YHFFNLLRSVHTVTSYCNFTGVGNLEREHL 592
           Y +  LLR V+T+  +C+  G+G     H+
Sbjct: 50  YTYTELLRRVNTIAKFCDDLGLGKTVGIHM 79


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 743 NLHRC-LPWIKIYI*VKKPCVILKG 672
           NL+R  +PW + Y+ VK+P + + G
Sbjct: 82  NLYRSRIPWKRAYLYVKRPALYIPG 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,483
Number of Sequences: 5004
Number of extensions: 61886
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)