Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29p01
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691...    28   9.5  
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961...    28   9.5  

>09_04_0656 +
           19267392-19267432,19267530-19267637,19269114-19269195,
           19269637-19269766,19269882-19270024,19270198-19270284,
           19270384-19270458
          Length = 221

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 485 YYNFFGYHFFNLLRSVHTVTSYCNFT--GVGNLEREHLVASG 604
           Y  FF Y+ FN+L  + +    C FT   VG+ ER    A G
Sbjct: 102 YKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQG 143


>03_06_0570 - 34794678-34795115,34795339-34795920,34796008-34796146,
            34796261-34796402,34796504-34796621,34796713-34796820,
            34796894-34796968,34797774-34798003,34798086-34798388,
            34798949-34799130,34800288-34800371,34800799-34801391
          Length = 997

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 348  ICLIDICVNVLLYSSCPRVYMAHSSRRE 265
            I +I +CV +LL++ CP+VY A + R E
Sbjct: 964  IAVICVCVGLLLHT-CPKVYAAPTFRWE 990


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,508,451
Number of Sequences: 37544
Number of extensions: 352793
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)