Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29o23
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    54   1e-08
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    38   0.001
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    37   0.002
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   5.7  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   9.9  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
 Frame = +1

Query: 280 MGIKGLWSVLTPFSEKKSLHELRGETIAVDLSGWVCDSQNVTEHHVQPKLYLRNL--FFR 453
           MG+ GLW +L P      L  L  + +A+D S W+             +L   ++  FFR
Sbjct: 1   MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60

Query: 454 TV-YLLLAEINPIFVLEGDAPELKRDVMATRNA 549
            +  LL   I P+FV +G AP LKR  +  R A
Sbjct: 61  RICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQA 93


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
 Frame = +1

Query: 280 MGIKGLWSVLT---PFSEKKS-LHELRGETIAVDLSGWVC---------DSQNVTEHHVQ 420
           MGIKGL  VL+   P S K + +    G  +A+D S  +          D Q +     +
Sbjct: 1   MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60

Query: 421 PKLYLRNLFFRTVYLLLAEINPIFVLEGDAPELKRDVMATRNAVQFRGAAPRSE-KACSS 597
              +L  +F+RT+ ++   I P FV +G  P LK   +A R A   +    + E K   +
Sbjct: 61  TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120

Query: 598 EKLPNVSRKRFKNVLKEFVD 657
            ++ +   KR   V ++  D
Sbjct: 121 AEMVDRFAKRTVKVTRQHND 140


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +1

Query: 280 MGIKGLWSVLTPFSEKKSLHELRGETIAVDLSGWVCDSQNVTEHHV----QPKLYLRNLF 447
           MGIKGL  +L P  +   + E  G+T+ VD   W+  +     H +    +   YL+   
Sbjct: 1   MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60

Query: 448 FRTVYLLLAEINPIFVLEG 504
            + + L    + P+ V +G
Sbjct: 61  HQALMLQYYGVKPLIVFDG 79


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 605 SFSLEQAFSDLGAAPRNWTAFRVA---ITSLLSSGASPSNTNIGFISANSRYTVLKNRFL 435
           S  L+    +LG A  +W A       + +L+  GA+P   N+   +A  R  ++ N   
Sbjct: 346 SLDLDVPIDELGHAALHWAAAVAKMPLLQALIHKGANPLRGNLTGETALMRSVLVTNHLN 405

Query: 434 RYNFG 420
           + +FG
Sbjct: 406 QNSFG 410


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 567 GTTKLDSISSSHYISFEFWCISFQYKYRIYFS 472
           G   LD + S+H +SF FW  +    +  YF+
Sbjct: 277 GQDVLDCLFSNHILSFNFWNPAGWMTFFYYFA 308


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 206 LKCIGYWYFV*LFIDVTATAIFAGYI 129
           LK    W+ + + ++VT T  F GY+
Sbjct: 17  LKKSSQWFLLIIIVEVTITLSFEGYV 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,423
Number of Sequences: 5004
Number of extensions: 60300
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)