Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29o23
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908... 58 5e-09
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 54 1e-07
08_01_0011 - 81673-81724,81826-82161,82426-82556,82629-82729,828... 54 1e-07
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 43 3e-04
11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868 31 1.1
10_01_0181 - 2041502-2043013 29 2.6
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 29 3.4
01_06_1722 - 39431480-39431626,39431760-39431882,39431986-394321... 29 3.4
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 29 3.4
10_08_0494 - 18308105-18309490 28 5.9
04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931... 28 7.8
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805 28 7.8
>09_05_0016 +
20089545-20089748,20090072-20090263,20090644-20090814,
20090915-20091096,20091189-20091435,20091776-20091908,
20092070-20092599,20092940-20093170
Length = 629
Score = 58.4 bits (135), Expect = 5e-09
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Frame = +1
Query: 280 MGIKG-LWSVLTPFSEKKSLHELRGETIAVDLSGWVCD-SQNVTEHHVQPKL-YLRNLFF 450
MG+ G W +L P++ + LRG +AVDLS WV S + +L +LR LFF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 451 RTVYLL-LAEINPIFVLEGDAPELKRDVMAT---RNAVQFRGAAPRSEKACSSEKLPNVS 618
RT+ L P+FV++G LK V A R + A P +E S++ L
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALVQPR 120
Query: 619 RKRFKNVLKEFVD 657
+F +++ V+
Sbjct: 121 NAKFTRYVEDCVE 133
>03_02_0078 +
5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 54.0 bits (124), Expect = 1e-07
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSEKKSLHELRGETIAVDLSGWVCDSQNVTEHHVQPKL---YLRNLFF 450
MG+ GLW +L P + S+ L G+ +AVD S W+ + +L
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 451 RTVYLLLAEINPIFVLEGDAPELKRDVMATRNAVQFRGAAPRSEKACSSEKL 606
R LL P+FV +G P LKR +A R + R AA +++ ++EKL
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRTLAARR--RHRDAA-QAKVRKTAEKL 109
>08_01_0011 -
81673-81724,81826-82161,82426-82556,82629-82729,
82849-82931,83154-83253,83366-83513,83664-83723,
84272-84345,84482-84554,84648-84699,84764-84897,
85096-85288,85386-85453
Length = 534
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSEKKSLHELRGETIAVDLSGWVCD--SQNVTEHHVQPKLYLRNLFFR 453
MG+K LW +L +K LH L+ + + VDLS W+ S N + + K+YL+NLF R
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 454 TVYLLLAEINPIFV 495
LL +FV
Sbjct: 61 IRALLALNCTLLFV 74
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSE----KKSLHELRGETIAVDLSGWVCD---------SQNVTEHHVQ 420
MGIKGL +L + ++ + + RG +A+D S + ++ +T +
Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
Query: 421 PKLYLRNLFFRTVYLLLAEINPIFVLEGDAPELKRDVMATRN 546
+L+ + RTV +L A I P+FV +G+ P++K+ +A R+
Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRS 102
>11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868
Length = 426
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 184 YQ*PIHLSSYQGSNS*TLEFYYGFIVIVCLNEMGIKGLWSVLTPFSEKKSLHELRGETIA 363
Y P+HL S GSNS GF+ + L+++ G + LT +K +LH++ +IA
Sbjct: 164 YSFPLHLFSVGGSNSCVKSLCLGFVSLNLLHQLSPAGNTNRLT-ILKKLTLHKV---SIA 219
Query: 364 VDLSGWV--CD 390
DL + CD
Sbjct: 220 GDLQSLLLECD 230
>10_01_0181 - 2041502-2043013
Length = 503
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = -1
Query: 173 LFIDVTATAIFAGYISQFMNFVVSK 99
+F+DV +A+ + IS+FM+F++SK
Sbjct: 27 IFMDVVISALVSDIISRFMSFLISK 51
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 653 TNSFKTFLNLFLETLGSFSLEQAFSDLGA 567
T+ K F +F +G SL QAFS+LGA
Sbjct: 307 TDGGKAFTAIFSAIVGGMSLGQAFSNLGA 335
>01_06_1722 -
39431480-39431626,39431760-39431882,39431986-39432131,
39432249-39432457,39432539-39432633,39433307-39433369,
39433828-39433905,39434009-39434125,39434496-39434567,
39434675-39434776,39434874-39435048,39435171-39435226,
39435887-39435967
Length = 487
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 262 IVCLNEMGIKGLWSVLTPFSEKKSLHELRGETIAVDLSGWVCDSQNVTEHHVQPKL 429
++CL +G+ W+V KK + +R + + ++CD N EH VQ KL
Sbjct: 30 LICLT-LGLG--WAVAA-LVRKKEIRRMRRRIVDGNSFAFLCDDVNELEHSVQEKL 81
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 280 MGIKGLWSVLTPFSEKKSLHELRGETIAVDLSGWV 384
MGI+GL L + L+G+T+AVD W+
Sbjct: 1 MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWL 35
>10_08_0494 - 18308105-18309490
Length = 461
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 486 YICIGRRCTRTQKRCNGYSKC 548
Y+C RRCT +K N +KC
Sbjct: 306 YLCKNRRCTEARKIFNSMTKC 326
>04_04_0118 -
22889608-22890816,22891990-22892261,22892306-22893131,
22893311-22893534,22893620-22893936,22894035-22894294,
22894723-22894923,22895015-22895190,22895445-22895718
Length = 1252
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 653 TNSFKTFLNLFLETLGSFSLEQAFSDLGA 567
T+ K F +F +G SL Q+FS+LGA
Sbjct: 287 TDGGKAFTAIFSAIVGGLSLGQSFSNLGA 315
>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
Length = 517
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +1
Query: 391 SQNVTEHHVQPKLYLRNLFFRTVYLLLAEINPIFVLEGDAPELKRDVMATRNAVQFRGAA 570
+QN +HH+ +L+++ + Y E + L AP LK+ ++A +A +
Sbjct: 404 TQNQRDHHIISLEHLQDIKITSAYKRQYEARLLKFLHASAPALKKMIVAFISAFMLSQSL 463
Query: 571 PRSEKAC 591
K C
Sbjct: 464 QICAKEC 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,105,784
Number of Sequences: 37544
Number of extensions: 343025
Number of successful extensions: 722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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